[gmx-users] Hexamer problem

[errabah fatima ezzahra]

 I will really appreciate any help of suggestions.I am doing simulation of six monomers of identical helical peptide. the experiment literature say that the peptides in a aqueous  solution should form a hexamer. so i have done simulations for the six peptides under normal conditions with T of 300k and the result are two trimer that are perpendicular with each other. 


I don't know that to do to get the monomers rearrange and form a heaxamer instead of two trimers.


Thank you

fatima-ezzahra.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110705/d17cab63/attachment.html>