[gmx-users] Fatal error: file type out of range (48)

[Justin A. Lemkul]

Carla Jamous wrote:
> Hi,
> 
> Please does anyone Know what this error means?
> 
> Fatal error:
> file type out of range (48)
> 
> Here's my script:
> 
> 
> #PBS -S /bin/bash
> #PBS -N job_md6ns
> #PBS -e job_md6ns.err
> #PBS -o job_md6ns.log
> #PBS -m ae -M carlajamous at gmail.com <mailto:carlajamous at gmail.com>
> #PBS -l select=2:ncpus=8:mpiprocs=8
> #PBS -l walltime=024:00:00
> cd $PBS_O_WORKDIR
> export GMXLIB=$GMXLIB:/scratch/carla/top:.
> module load gromacs
> mdrunmpi="mpiexec /opt/software/SGI/gromacs/4.5.4/bin/mdrun"
> ${mdrunmpi} -v -s  .tpr -o  .trr -cpo state_6ns.cpt -c  .gro -x  .xtc -e 
> .edr -g .log
> 

This mdrun command does not make sense.  You can't simply supply file extensions 
as the arguments, and hence you're being told that the file type (detected from 
the extension of a real file name) is null.  Provide real file names.

-Justin

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================