[gmx-users] gromacs 2.1

[chris.neale at utoronto.ca]

In the middle of my last post, it should have stated:

"I moved the **include** directory into src/ and that solved the error
messages that I was obtaining, but now make errors with:"

Sorry for the confusion,
Chris.

Quoting chris.neale at utoronto.ca:

> Thank you Rossen and Roland.
>
> I was able to obtain the source but not compile it. It would be
> appreciated if you can offer any suggestions.
>
> I obtained gromacs via:
>
> git clone git://git.gromacs.org/gromacs.git
> git checkout release-2-0-01
>
> But I can not compile it. When I cd src and run make or gmake I get
> the errors listed below.
>
> ... <snip> ...
> gmake[348]: Entering directory
> `/project/pomes/cneale/GPC/exe/intel/gromacs-git/gromacs/src'
> cd include; gmake oclean; cd ..; cd gmxlib; gmake oclean; cd ..; cd
> mdlib; gmake oclean; cd ..; cd fftw; gmake oclean; cd ..; cd kernel;
> gmake oclean; cd ..; cd tools; gmake oclean; cd ..;
> /bin/sh: line 0: cd: include: No such file or directory
> gmake[349]: Entering directory
> `/project/pomes/cneale/GPC/exe/intel/gromacs-git/gromacs/src'
> cd include; gmake oclean; cd ..; cd gmxlib; gmake oclean; cd ..; cd
> mdlib; gmake oclean; cd ..; cd fftw; gmake oclean; cd ..; cd kernel;
> gmake oclean; cd ..; cd tools; gmake oclean; cd ..;
> ... <snip> ...
>
> I tried the documentation, but the FAQ file at
> file:///home/cneale/work/June2011/gromacs/share/html/gmxfaq.html#install   
> links
> to a non-existant file
> file:///home/cneale/work/June2011/gromacs/share/html/readme2.0.html#install
> .
>
> I moved the install directory into src/ and that solved the error
> messages that I was obtaining, but now make errors with:
>
> /project/pomes/cneale/GPC/exe/intel/gromacs-git/gromacs/src/include/smalloc.h:36:2: warning: #ident is a deprecated   
> GCC
> extension
> dlist.c:197:1: error: pasting "." and "H" does not give a valid
> preprocessing token
> dlist.c:197:1: error: pasting "." and "N" does not give a valid
> preprocessing token
> dlist.c:197:1: error: pasting "." and "Cn" does not give a valid
> preprocessing token
> dlist.c:197:1: error: pasting "." and "C" does not give a valid
> preprocessing token
> dlist.c:200:1: error: pasting "." and "N" does not give a valid
> preprocessing token
> dlist.c:200:1: error: pasting "." and "Cn" does not give a valid
> preprocessing token
> dlist.c:200:1: error: pasting "." and "C" does not give a valid
> preprocessing token
> dlist.c:200:1: error: pasting "." and "O" does not give a valid
> preprocessing token
> dlist.c:203:1: error: pasting "." and "minO" does not give a valid
> preprocessing token
> dlist.c:203:1: error: pasting "." and "minC" does not give a valid
> preprocessing token
> dlist.c:203:1: error: pasting "." and "N" does not give a valid
> preprocessing token
> dlist.c:203:1: error: pasting "." and "Cn" does not give a valid
> preprocessing token
> dlist.c:212:1: error: pasting "." and "Cn" does not give a valid
> preprocessing token
> dlist.c:212:1: error: pasting "." and "Cn" does not give a valid
> preprocessing token
> dlist.c:212:1: error: pasting "." and "Cn" does not give a valid
> preprocessing token
> dlist.c:212:1: error: pasting "." and "Cn" does not give a valid
> preprocessing token
> make[1]: *** [dlist.o] Error 1
> make[1]: Leaving directory
> `/project/pomes/cneale/GPC/exe/intel/gromacs-git/gromacs/src/tools'
>
> Also moving the lib directory into the src directory did not help   
> any further.
>
> The compiler was gcc version 4.4.0
>
> Thank you very much,
> Chris.
>
> -- original message --
>
> You can try also
>
> $ git tag
> release-1-6
> release-1-6-01
> release-2-0
> release-2-0-01
> release-2-0-02
> release-3-0
> release-3-1
> release-3-1-1
> release-3-1-2
> release-3-1-3
> release-3-1-4
> release-3-2
> v4.0.7
> v4.5
> v4.5-beta1
> v4.5-beta2
> v4.5-beta3
> v4.5-beta4
> v4.5.1
> v4.5.2
> v4.5.3
> v4.5.4
>
> # git checkout release-2-0-01
>
>
> On 6/12/11 11:49 AM, Roland Schulz wrote:
>> Hi,
>>
>> you can get it from git. "git log {file}" shows the history and git
>> show {version}:{file} gives you a specific version.
>> In this case you can use:
>> git show 74b20ce9:src/tools/g_order.c
>>
>
> Is that the "official" 2.1? We should tag it then.
>
> Rossen
>
>> Roland
>>
>> On Sat, Jun 11, 2011 at 10:11 PM, <chris.neale at utoronto.ca
>> <mailto:chris.neale at utoronto.ca>> wrote:
>>
>>     Dear users:
>>
>>     Does anybody have the source code for gromacs version 2.1? I would
>>     like to check the original source of g_order, but only versions
>>     3.0 and above are available on the gromacs website.
>>
>>     Thank you,
>>     Chris.
>>
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>
>
>