[gmx-users] select in pymol after trjconv

ZHAO Lina lnzhao99 at gmail.com
Mon Mar 7 15:02:22 CET 2011


after added ions, I got a solv_ions.gro.

I use trjconv

to produce the solv_ions.pdb

when I view it in pymol.

I showed sequence,
it like

  1      2   3   4   6

But the solv_ions.pdb looks pretty regular.

my problem is that,

how could I choose the protein parts.

I tried the select protein, resi 1-48
some waters are inclusive.

Thanks for any suggestion.

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