[gmx-users] g_rmsf

Justin A. Lemkul jalemkul at vt.edu
Mon Mar 7 16:29:02 CET 2011

vferrario at units.it wrote:
> Dear all,
> I want to calculate the C-alfa fluctuation of a protein during a 
> trajectory with g_rmsf but I have just one question about the otput: 
> which is the difference using -o output and -od output? So what is the 
> difference between fluctuation and deviation?


Other information in MD textbooks may be useful.


> Thanks a lot in advance.
> Valerio
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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