[gmx-users] g_rmsf

[vferrario at units.it]

Thanks a lot.

Valerio

"Justin A. Lemkul" <jalemkul at vt.edu> ha scritto:

>
>
> vferrario at units.it wrote:
>> Dear all,
>>
>> I want to calculate the C-alfa fluctuation of a protein during a  
>> trajectory with g_rmsf but I have just one question about the  
>> otput: which is the difference using -o output and -od output? So  
>> what is the difference between fluctuation and deviation?
>
> http://en.wikipedia.org/wiki/Root_mean_square_fluctuation
> http://en.wikipedia.org/wiki/Root_mean_square_deviation
>
> Other information in MD textbooks may be useful.
>
> -Justin
>
>>
>> Thanks a lot in advance.
>>
>> Valerio
>>
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>>
>
> -- 
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
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