[gmx-users] g_membed tool

[Igor Marques]

dear mohana,

please refer to this page <http://wwwuser.gwdg.de/%7Eggroenh/membed.html>,
to this article
<http://onlinelibrary.wiley.com/doi/10.1002/jcc.21507/pdf>(g_membed:
Efficient Insertion of a Membrane Protein into an Equilibrated
Lipid Bilayer with Minimal Perturbation) or to this
manual<http://wwwuser.gwdg.de/%7Eggroenh/submitted/Membed_rev.pdf>,
that apparently compiles both the page and the article.

good luck,
      Igor Marques


On Wed, Mar 16, 2011 at 4:51 AM, Mohana lakshmi <mohanaa87 at yahoo.in> wrote:

> Dear all..
>
> I am using g_membed tools to embed the protein into lipid membrane. I read
> that before doing g_membed we need to run a short run with some options in
> .mdp files.
> what are the steps do we need to do before g_membed. It is given that box
> size should be taken from the membrane strucuture file but i don t know how
> and where to mention the size?
> Whether any tutorial is available for transmembrane protein using g_membed
> tool?
>
> Thank you
>
> Mohanalakshmi N.
>
>
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