[gmx-users] g_membed tool

Igor Marques igor.dragon88 at gmail.com
Wed Mar 16 17:38:25 CET 2011

dear mohana,

please refer to this page <http://wwwuser.gwdg.de/%7Eggroenh/membed.html>,
to this article
Efficient Insertion of a Membrane Protein into an Equilibrated
Lipid Bilayer with Minimal Perturbation) or to this
that apparently compiles both the page and the article.

good luck,
      Igor Marques

On Wed, Mar 16, 2011 at 4:51 AM, Mohana lakshmi <mohanaa87 at yahoo.in> wrote:

> Dear all..
> I am using g_membed tools to embed the protein into lipid membrane. I read
> that before doing g_membed we need to run a short run with some options in
> .mdp files.
> what are the steps do we need to do before g_membed. It is given that box
> size should be taken from the membrane strucuture file but i don t know how
> and where to mention the size?
> Whether any tutorial is available for transmembrane protein using g_membed
> tool?
> Thank you
> Mohanalakshmi N.
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