[gmx-users] DO_DSSP

[Mark Abraham]

On 6/05/2011 5:22 PM, battistia at libero.it wrote:
>
> Dear all,
>
>
> I'm trying install do_dssp on my pc.
>
> I followed the steps indicated in the page:
>
> http://lists.gromacs.org/pipermail/gmx-users/2010-November/055728.html
>
>
> >> 1.step-root at ab-desktop:/path-dsspcmbi.tar.gz/# tar xvzf 
> dsspcmbi.tar.gz
> >> 2.step-root at ab-desktop:/path-dsspcmbi.tar.gz/dssp#./DsspCompileGCC
> >> 3.step-root at ab-desktop:/path-dsspcmbi.tar.gz/dssp# cp dsspcmbi dssp
> >> 4.step-root at ab-desktop:/path-dsspcmbi.tar.gz/dssp# mv dssp 
> /usr/local/bin
>
>
> and the program work well.
>
>
> Now my question:
>
> How the program use the file that I downloaded from the web-page:
>
> http://swift.cmbi.ru.nl/gv/dssp/   using the indicated instruction?
>

GROMACS doesn't. Read the DSSP documentation about what it is providing.

> (I found this page from 
> http://www.gromacs.org/Developer_Zone/Programming_Guide/DSSP)
>
> rsync -avz rsync://rsync.cmbi.ru.nl/dssp/ /path_to_dssp/
>
> The link  rsync://rsync.cmbi.ru.nl/dssp/  is one of the best 
> //database //to calculate the angle into the secondary structures and 
> so to define that, isn't it?
>

One doesn't need a database to calculate angles.

Mark
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