[gmx-users] -ci option

Justin A. Lemkul jalemkul at vt.edu
Mon May 23 17:45:23 CEST 2011

shivangi nangia wrote:
> Dear gmx users,
> I want to insert few ions in my system randomly.
> -ci option does that, but I want various "different" random 
> configurations of the ions in my system.
> Using -ci option does randomly place ions but at the same coordinates 
> each time.
> Is there a way to randomly generate various configurations of ions each 
> time on using -ci?

Set a different value of -seed.


> Thanks,
> SN


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


More information about the gromacs.org_gmx-users mailing list