[gmx-users] -ci option

[Jon Kapla]

On 2011-05-23 17:43, shivangi nangia wrote:
> Dear gmx users,
>
> I want to insert few ions in my system randomly.
>
> -ci option does that, but I want various "different" random 
> configurations of the ions in my system.
>
> Using -ci option does randomly place ions but at the same coordinates 
> each time.
>
> Is there a way to randomly generate various configurations of ions 
> each time on using -ci?
>
>
> Thanks,
> SN
>
If you're using genbox then I would guess that you can use the -seed 
option to set another random seed.

Regards
Jon

-- 
_____________________________________________________

Jon Kapla
   Division of Physical Chemistry
   Dpt. of Materials and Environmental Chemistry (MMK)
   Arrhenius Laboratory
   Stockholm University
   SE-106 91 Stockholm
Pos:    PhD Student
Phone:  +46 8 16 11 79 (office)
Phone:  +46 70 304 19 89 (cell)
E-mail: jon.kapla at mmk.su.se
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