[gmx-users] -ci option

[Peter C. Lai]

On 2011-05-23 10:43:49AM -0500, shivangi nangia wrote:
> Dear gmx users,
> 
> I want to insert few ions in my system randomly.
> 
> -ci option does that, but I want various "different" random configurations of the ions in my system.
> 
> Using -ci option does randomly place ions but at the same coordinates each time.
> 
> Is there a way to randomly generate various configurations of ions each time on using -ci?
> 
> 
> Thanks,
> SN
> 

Try using genion instead?
It allows for -seed to specify random factor.

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Peter C. Lai                 | University of Alabama-Birmingham
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