[gmx-users] Gromacs query for vaccum medium

[Mark Abraham]

On 4/11/2011 4:58 AM, Anushree Tripathi wrote:
> Let me know how to simulate a membrane protein in vaccum medium by 
> using gromacs commands.What are the basic differences in commands as 
> well as parameters used in liquid and vaccum medium? Please guide me.

I suggest you do all the GROMACS tutorial material you can find, and 
supplement that with reading several published articles that do 
simulations with objectives similar to yours.

Mark