[gmx-users] Gromacs query for vaccum medium

Anushree Tripathi anushritripathi at gmail.com
Fri Nov 4 17:03:14 CET 2011

I have seen different articles on MD simulation in vaccum but i didn't get
the exact way for it.If u can tell me the exact way then i can proceed for
it fastly because I have to do it within certain time limit.

On Thu, Nov 3, 2011 at 11:43 PM, Mark Abraham <Mark.Abraham at anu.edu.au>wrote:

> On 4/11/2011 4:58 AM, Anushree Tripathi wrote:
>> Let me know how to simulate a membrane protein in vaccum medium by using
>> gromacs commands.What are the basic differences in commands as well as
>> parameters used in liquid and vaccum medium? Please guide me.
> I suggest you do all the GROMACS tutorial material you can find, and
> supplement that with reading several published articles that do simulations
> with objectives similar to yours.
> Mark
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users>
> Please search the archive at http://www.gromacs.org/**
> Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before posting!
> Please don't post (un)subscribe requests to the list. Use the www
> interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20111104/238b751f/attachment.html>

More information about the gromacs.org_gmx-users mailing list