[gmx-users] CygWin and Gromacs 4.5.5

bhf70 at udsu.ru bhf70 at udsu.ru
Tue Nov 8 12:41:51 CET 2011


Help me.
I want to install Gromacs 4.5.5 with usage CygWin.
When I execute a command "make" I receive the error report:

numa_malloc.c:117: error: expected '> ' before ' Processor'
numa_malloc.c:117: error: expected '> ' before ' ProcNumber'
numa_malloc.c:117: error: expected ' = ', ', ', '; ', ' asm '
or.....................
...
make [3]: *** [numa_malloc.lo] Error 1
make [3]: leaving directory '/cygdrive/.....
gromacs4.5.5/src/gmxlib/thread_mpi'
make [3]: *** [install-recursive] Error 1
make [3]: leaving directory '/cygdrive/..... gromacs4.5.5/src/gmxlib'
make [3]: *** [install-recursive] Error 1
make [3]: leaving directory '/cygdrive/..... gromacs4.5.5/src'
make [3]: *** [install-recursive] Error 1

Where an error?


CygWin it is installed with packets:
Section "Devel"
- autoconf: Wrapper scripts for autoconf commands
- autoconf2.1: Stable version of the automatic configure script builder
- autoconf2.5: Development version of the automatic configure script builder
- automake1.9: a tool for generating GNU-compliant Makefiles
- binutils: The GNU assembler, linker and binary utilites
- gcc: A C compiler upgrade helper
- gcc-core: A C compiler
- gcc-g ++: A C ++ compiler
- gcc-g77: Fortran compiler
- gcc-mingw-core: Mingw32 support headers and libraries for GCC
- gcc-mingw-g ++: Mingw32 support headers and libraries for GCC A C ++
- gcc-mingw-g77: Mingw32 support headers and libraries for GCC Fortran
- libgcc1: GCC compiler support shared runtime
- libgdbm-devel: GNU dbm database routines (development)
- make: The GNU version of the ` make ` utility
- mingw-runtime: MinGW Runtime

Section "Interpreters"
- perl: Larry Wall ` s Practical Extracting and Report Language

Packet FFTW ver.3.2.2 is in addition compiled and installed

Trial setting Gromacs of 4.5.3 errors does not give.

The instruction on setting took here:
http://lists.groma cs.org/pipermail/gmx-users/2009-September/044792.html

The error arises only for version Gromacs 4.5.5


Igor





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