[gmx-users] Simulation of membrane protein

[James Starlight]

Justin,


2011/11/11 Justin A. Lemkul <jalemkul at vt.edu>

>
>
> If the bilayer is splitting across periodic boundaries (I'm assuming
> that's what you mean by "pb"), then it's more likely that you placed the
> components of your system in an inconvenient way than it is that something
> is actually wrong.
>

Bilayer has moved on Z-dimension in periodic box.  That is actually what's
happend :)
http://i1209.photobucket.com/albums/cc394/own11/vmdscene.gif


By the way I'ts intresting that Gmembed has removed 6 lipids in comparison
to the inflateglo ( althought I've done all things in accordance to the
KALP tutorial because my protein is the same).


James
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