[gmx-users] g_clustsize

[mohammad agha]

Dear Prof.

I have some problems about g_clustsize program and I didn't find my answer in mailing list. Please help me.
I don't know what is the base of selection for -cut option?
In my system after doing g_clustsize, when I see nclust.xvg file, it looks like all the atoms in the system were used to find clusters.

@    title "Number of clusters"
@    xaxis  label "Time (ps)"
@    yaxis  label "N"
@TYPE xy
  0.000000e+00         413
  1.500000e+02         362
  3.000000e+02         348
  4.500000e+02         304
  6.000000e+02         274
  7.500000e+02         255
  9.000000e+02         243
  1.050000e+03         233
  1.200000e+03         218
  1.350000e+03         211
  1.500000e+03         199
  1.650000e+03         190
  1.800000e+03         192
  1.950000e+03         179
  2.100000e+03         172
  2.250000e+03         170
.....

.....
.....
  5.992500e+05           9
  5.994000e+05          10
  5.995500e+05           9
  5.997000e+05           9
  5.998500e+05           9
  6.000000e+05           9
My system consist of 500 monmer.

Please help me.

Best Regards
SARA
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