[gmx-users] Re: atoms jumps from its native position in protein

[Parthiban Marimuthu]

Hi
i am trying to study protein-ligand interaction.
at the end of the simulation, the visualization via- VMD shows, some of the
atoms suddenly jumped from its place to another space for a short time and
comes back to its position connected by huge lines. i dont have any idea
what is the real technical term to describe that.
i am not sure where i am making mistake.
could any one suggest this how to tackle this problem.
thanks
Parthiban
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