October 2011 Archives by author

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Starting: Sat Oct 1 09:09:26 CEST 2011
Ending: Mon Oct 31 23:42:51 CET 2011
Messages: 763

[gmx-users] NVT Equilibration getting blown up Mark Abraham
[gmx-users] g_clustsize and temp.xvg Mark Abraham
[gmx-users] analyzing protein conformation stability Mark Abraham
[gmx-users] RMSD bonds and angles Mark Abraham
[gmx-users] partial atomic charges Mark Abraham
[gmx-users] RMSD bonds and angles Mark Abraham
[gmx-users] NVT equilibration of Ethanol in OPLSAA. Mark Abraham
[gmx-users] Creating topology with bonds over pbc Mark Abraham
[gmx-users] how to install the gromacs-4.5.5 with the gpu on the linux Mark Abraham
[gmx-users] NVT equilibration of ethanol in OPLSAA ff Mark Abraham
[gmx-users] angke definition Mark Abraham
[gmx-users] Protein_model_refinement Mark Abraham
[gmx-users] iron sulphur cluster Mark Abraham
[gmx-users] error while energy minimization with the protein fixed Mark Abraham
[gmx-users] snap shot Mark Abraham
[gmx-users] grompp error Mark Abraham
[gmx-users] Ligand scattered out of the protein Mark Abraham
[gmx-users] CMAP for alanine dipeptide in Charmm27 ff Mark Abraham
[gmx-users] Re: reasons for slow computation? Mark Abraham
[gmx-users] vdwtype = cut-off Mark Abraham
[gmx-users] Re: reasons for slow computation? Mark Abraham
[gmx-users] Implicit solvent problems Mark Abraham
[gmx-users] Pressure very high with chloroform and gromacs-4.5.5 Mark Abraham
[gmx-users] Pressure very high with chloroform and gromacs-4.5.5 Mark Abraham
[gmx-users] Pressure very high with chloroform and gromacs-4.5.5 Mark Abraham
[gmx-users] Uniform Distribution of drug molecules inside water spc216 Mark Abraham
[gmx-users] Re: Implicit solvent problems Mark Abraham
[gmx-users] New DSSP vs do_dssp (gromacs-4.5.4) Mark Abraham
[gmx-users] Mixing Force Fields Mark Abraham
[gmx-users] reg plumed gromacs Mark Abraham
[gmx-users] REMD and GBSA Mark Abraham
[gmx-users] Link to Intel MKL (fftw) via cmake options Mark Abraham
[gmx-users] how to calculate the normal of plane for Tryptophan or how to get the comparison matrix in g_rms Mark Abraham
[gmx-users] Normal Mode Analysis Mark Abraham
[gmx-users] Link to Intel MKL (fftw) via cmake options Mark Abraham
[gmx-users] Link to Intel MKL (fftw) via cmake options Mark Abraham
[gmx-users] High temperature Simulation Mark Abraham
[gmx-users] cyclosporine A Mark Abraham
[gmx-users] Spherical constraint (spherical force) Mark Abraham
[gmx-users] REMD and GBSA Mark Abraham
[gmx-users] box dimension Mark Abraham
[gmx-users] Updating charges on-the-fly Mark Abraham
[gmx-users] acylation of peptide Mark Abraham
[gmx-users] box dimension Mark Abraham
[gmx-users] some problems when using g_membed Mark Abraham
[gmx-users] potential energy of one molecule using GAFF: confused regarding Ryckaert-Bellemans and 1-4 potentials Mark Abraham
[gmx-users] calculation time Mark Abraham
[gmx-users] atom names in ffbonded.itp (oplsaa.ff) Mark Abraham
[gmx-users] calculation time Mark Abraham
[gmx-users] calculation time Mark Abraham
[gmx-users] REMD output Mark Abraham
[gmx-users] Problem in the inclusion of Potassium ion topology Mark Abraham
[gmx-users] ZN charge Mark Abraham
[gmx-users] improper OPLS dihedrals in gromacs Mark Abraham
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Mark Abraham
[gmx-users] Minimization error Mark Abraham
[gmx-users] Solvent accessible surface area units Mark Abraham
[gmx-users] potential energy of one molecule using GAFF: confused regarding Ryckaert-Bellemans and 1-4 potentials Mark Abraham
[gmx-users] extending simulation with grompp incorporating velocities Mark Abraham
[gmx-users] extending simulation with grompp incorporating velocities Mark Abraham
[gmx-users] Re: Preparation of the pure lipid system with charmm force field Mark Abraham
[gmx-users] increase the time frame Mark Abraham
[gmx-users] extend simulation without tpbconv Mark Abraham
[gmx-users] Normal Mode Analysis Mark Abraham
[gmx-users] Normal Mode Analysis Mark Abraham
[gmx-users] Normal Mode Analysis Mark Abraham
[gmx-users] Slow in double-precision version Mark Abraham
[gmx-users] modeling cation-pi box Mark Abraham
[gmx-users] Slow in double-precision version Mark Abraham
[gmx-users] Lyzosyme with ligand tutorial Mark Abraham
[gmx-users] Fatal error in MPI_Allreduce upon REMD restart Mark Abraham
[gmx-users] Gromacs inquiries Mark Abraham
[gmx-users] Normal Mode Analysis Mark Abraham
[gmx-users] About implicit wall... Mark Abraham
[gmx-users] Gromacs inquiries Mark Abraham
[gmx-users] Normal Mode Analysis Mark Abraham
[gmx-users] position restrained minimization on the one part of a system Mark Abraham
[gmx-users] position restrained minimization on the one part of a system Mark Abraham
[gmx-users] polymer chain length and density Mark Abraham
[gmx-users] Fatal error in MPI_Allreduce upon REMD restart Mark Abraham
[gmx-users] Installing Gromacs 4.5.3 on Mac OS X Mark Abraham
[gmx-users] Normal Mode Analysis Mark Abraham
[gmx-users] How to convert a gromacs trajectory to Desmond trajectory format Mark Abraham
[gmx-users] How to convert a gromacs trajectory to Desmond trajectory format Mark Abraham
[gmx-users] problem with compiling fftw Mark Abraham
[gmx-users] trjconv and -pbc Mark Abraham
[gmx-users] How to change moment of inertia of a molecule Mark Abraham
[gmx-users] lost ngmx Mark Abraham
[gmx-users] Parametrisation of the heteroatomic pdb Mark Abraham
[gmx-users] Parametrisation of the heteroatomic pdb Mark Abraham
[gmx-users] Difference in hydrogen bonds between different softwares Mark Abraham
[gmx-users] Parametrisation of the heteroatomic pdb Mark Abraham
[gmx-users] problem with Threading during run Mark Abraham
[gmx-users] how to calculate the force between two groups Mark Abraham
[gmx-users] average structure Mark Abraham
[gmx-users] Nonbonded energy Protein-Ligands Mark Abraham
[gmx-users] problem with Threading during run Mark Abraham
[gmx-users] Link to Intel MKL (fftw) via cmake options Mark Abraham
[gmx-users] position restraints on heavy atoms or all? Mark Abraham
[gmx-users] Number of nodes Mark Abraham
[gmx-users] Simulation of membrane protein Mark Abraham
[gmx-users] analyzing protein conformation stability Sajad Ahrari
[gmx-users] acpype generated different tip3p water paramters Alan
[gmx-users] DNA dangling bond Nuria Alegret
[gmx-users] Pressure very high with chloroform and gromacs-4.5.5 Nuno Azoia
[gmx-users] Pressure very high with chloroform and gromacs-4.5.5 Nuno Azoia
[gmx-users] Pressure very high with chloroform and gromacs-4.5.5 Nuno Azoia
[gmx-users] file.itp for separated molecules Fahimeh Baftizadeh
[gmx-users] Free Energy Question Emanuel Birru
[gmx-users] calculation time Emanuel Birru
[gmx-users] Conference "Frontiers in Biomolecular Simulation" Rainer Boeckmann
[gmx-users] Virtual Sites in a polymer backbone Broadbent, Richard
[gmx-users] Virtual Sites in a polymer backbone Broadbent, Richard
[gmx-users] how to calculate the normal of plane for Tryptophan or how to get the comparison matrix in g_rms Broadbent, Richard
[gmx-users] improper OPLS dihedrals in gromacs Richard Broadbent
[gmx-users] TIP5P calculating the dummy positions Richard Broadbent
[gmx-users] TIP5P calculating the dummy positions Richard Broadbent
[gmx-users] Free Energy Question Fabian Casteblanco
[gmx-users] Question about Justin's Free Energy Tutorial Fabian Casteblanco
[gmx-users] Re: Question about Justin's Free Energy Tutorial Fabian Casteblanco
[gmx-users] FEP Fabian Casteblanco
[gmx-users] Re: FEP Fabian Casteblanco
[gmx-users] Re: FEP Fabian Casteblanco
[gmx-users] Peturbing a Dihedral for FEP Fabian Casteblanco
[gmx-users] Mixing Force Fields Fabian Casteblanco
[gmx-users] g_clustsize and temp.xvg Dr. Vitaly V. Chaban
[gmx-users] Re: A quick Q: How to get the history in make_ndx Dr. Vitaly V. Chaban
[gmx-users] Re:Mixing Force Fields Dr. Vitaly V. Chaban
[gmx-users] Re:polymer chain length and density Dr. Vitaly V. Chaban
[gmx-users] Re: Dear Chaban lincs warning Dr. Vitaly V. Chaban
[gmx-users] Re: Dear Chaban lincs warning Dr. Vitaly V. Chaban
[gmx-users] Re: Dear Chaban lincs warning Dr. Vitaly V. Chaban
[gmx-users] Re: Structure preparation for the simulation Dr. Vitaly V. Chaban
[gmx-users] pull code problem: between protofilaments Shilpi Chaurasia
[gmx-users] extending simulation with grompp incorporating velocities Chandan Choudhury
[gmx-users] extending simulation with grompp incorporating velocities Chandan Choudhury
[gmx-users] extend simulation without tpbconv Chandan Choudhury
[gmx-users] snap shot Nilesh Dhumal
[gmx-users] snap shot Nilesh Dhumal
[gmx-users] trjconv:solute at the center Nilesh Dhumal
[gmx-users] trjconv:solute at the center Nilesh Dhumal
[gmx-users] trjconv:solute at the center Nilesh Dhumal
[gmx-users] trjconv:solute at the center Nilesh Dhumal
[gmx-users] trjconv:solute at the center Nilesh Dhumal
[gmx-users] box dimension Nilesh Dhumal
[gmx-users] box dimension Nilesh Dhumal
[gmx-users] force field for argon Dmitri Dubov
[gmx-users] potential energy of one molecule using GAFF: confused regarding Ryckaert-Bellemans and 1-4 potentials Vedat Durmaz
[gmx-users] potential energy of one molecule using GAFF: confused regarding Ryckaert-Bellemans and 1-4 potentials Vedat Durmaz
[gmx-users] potential energy of one molecule using GAFF: confused regarding Ryckaert-Bellemans and 1-4 potentials Vedat Durmaz
[gmx-users] make_ndx and rdf Molecular Dynamics
[gmx-users] modeling cation-pi box EGY
[gmx-users] modeling cation-pi box EGY
[gmx-users] Installing Gromacs 4.5.3 on Mac OS X Denny Frost
[gmx-users] Installing Gromacs 4.5.3 on Mac OS X Denny Frost
[gmx-users] (no subject) Sai Janani Ganesan
[gmx-users] (no subject) Sai Janani Ganesan
[gmx-users] (no subject) Sai Janani Ganesan
[gmx-users] grompp error Chunxia Gao
[gmx-users] gromacs installation Chunxia Gao
[gmx-users] RE:RE: gromacs installation Chunxia Gao
[gmx-users] orientation restraints in binding free energy calculation Chunxia Gao
[gmx-users] using gromacs with an specific GCC Nathalia Garces
[gmx-users] LINCS crushes Yuri Garmay
[gmx-users] LINCS crushes Yuri Garmay
[gmx-users] How to change moment of inertia of a molecule Rini Gupta
[gmx-users] Domain decomposition error in alchemical free energy perturbation MD Xiaoxiao He
[gmx-users] Re: Domain decomposition error in alchemical free energy perturbation MD Xiaoxiao He
[gmx-users] N-terminal PGLU and C-term amidation Henry Hocking
[gmx-users] Spherical constraint (spherical force) Jochen Hub
[gmx-users] Ligand scattered out of the protein ITHAYARAJA
[gmx-users] Re: topology error ITHAYARAJA
[gmx-users] error in Solvation ITHAYARAJA
[gmx-users] Segmentation fault ITHAYARAJA
[gmx-users] vdwtype = cut-off Carla Jamous
[gmx-users] convert parameters of Buckingham potential to/from LJ potential Kan
[gmx-users] Adding hydrogens to united atom trajectories Jon Kapla
[gmx-users] Getting an .edr file from trajectory Taylor Kaplan
[gmx-users] "Simulation" of a crystal Itamar Kass
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Itamar Kass
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Itamar Kass
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Itamar Kass
[gmx-users] Re: Structure preparation for the simulation Itamar Kass
[gmx-users] RMSF calculations Gurunath Katagi
[gmx-users] Gromacs: Cloud Vs. Boinc Server? Gregory Kielian
[gmx-users] how can I get the .top file?? Kiwoong Kim
[gmx-users] About implicit wall... Kiwoong Kim
[gmx-users] Jarzinsky's inequality from SMD simulation Laura Kingsley
[gmx-users] Jarzinsky's inequality from SMD simulation Laura Kingsley
[gmx-users] Particle Insertion Method tpi - units and compensation of charged system Kathleen Kirchner
[gmx-users] Interfacial tension of liquid-liquid system Karina Kovalchuk
[gmx-users] query on OPLS-2005 Cara Kreck
[gmx-users] Gromacs: Cloud Vs. Boinc Server? Matt Larson
[gmx-users] Gromacs-GPU with an Nvidia GeForce GTX 580 error? Matt Larson
[gmx-users] Gromacs-GPU with an Nvidia GeForce GTX 580 error? Matt Larson
[gmx-users] System heating up during MD run? (Implicit solvent) Matt Larson
[gmx-users] Energy Drift Per Larsson
[gmx-users] System heating up during MD run? (Implicit solvent) Per Larsson
[gmx-users] topologies for POPE and DMPE Roy Lee
[gmx-users] CHARMM GUI to Gromacs Roy Lee
[gmx-users] About the GROMOS96 parameters files Justin A. Lemkul
[gmx-users] Regarding 1-d free energy profile from g_sham Justin A. Lemkul
[gmx-users] Regarding 1-d free energy profile from g_sham Justin A. Lemkul
[gmx-users] RE:How to change the screen's output frequency? Justin A. Lemkul
[gmx-users] make_ndx and rdf Justin A. Lemkul
[gmx-users] make_ndx and rdf Justin A. Lemkul
[gmx-users] MD with membrane protein Justin A. Lemkul
[gmx-users] heteroatom not to be a ligand Justin A. Lemkul
[gmx-users] partial atomic charges Justin A. Lemkul
[gmx-users] Dihedral transition times for a non-protein structure Justin A. Lemkul
[gmx-users] NVT Equilibration Justin A. Lemkul
[gmx-users] Forcefield for Lipids Justin A. Lemkul
[gmx-users] iron sulphur cluster Justin A. Lemkul
[gmx-users] error while energy minimization with the protein fixed Justin A. Lemkul
[gmx-users] (no subject) Justin A. Lemkul
[gmx-users] Question about Justin's Free Energy Tutorial Justin A. Lemkul
[gmx-users] (no subject) Justin A. Lemkul
[gmx-users] Re: atoms jumps from its native position in protein Justin A. Lemkul
[gmx-users] grompp error Justin A. Lemkul
[gmx-users] error_in topology Justin A. Lemkul
[gmx-users] FEP Justin A. Lemkul
[gmx-users] topology_for_3 point model Justin A. Lemkul
[gmx-users] g_hbond Justin A. Lemkul
[gmx-users] g_hbond Justin A. Lemkul
[gmx-users] Re: topology error Justin A. Lemkul
[gmx-users] FEP Justin A. Lemkul
[gmx-users] How to obtain structures with large RMSD? Justin A. Lemkul
[gmx-users] How to obtain structures with large RMSD? Justin A. Lemkul
[gmx-users] How to obtain structures with large RMSD? Justin A. Lemkul
[gmx-users] How to obtain structures with large RMSD? Justin A. Lemkul
[gmx-users] Virtual Sites in a polymer backbone Justin A. Lemkul
[gmx-users] using gromacs with an specific GCC Justin A. Lemkul
[gmx-users] snap shot Justin A. Lemkul
[gmx-users] problem_with_rewritting_pdb Justin A. Lemkul
[gmx-users] reasons for slow computation? Justin A. Lemkul
[gmx-users] Reduce the frequency to apply distance restrain Justin A. Lemkul
[gmx-users] not guaranteed to be binary identical ? Justin A. Lemkul
[gmx-users] Re: reasons for slow computation? Justin A. Lemkul
[gmx-users] H-bond lifetime with g_hbond Justin A. Lemkul
[gmx-users] lipid membrane slicing Justin A. Lemkul
[gmx-users] Uniform Distribution of drug molecules inside water spc216 Justin A. Lemkul
[gmx-users] protein-water distance restraints Justin A. Lemkul
[gmx-users] Potential Energy Landscape Justin A. Lemkul
[gmx-users] mktop Justin A. Lemkul
[gmx-users] mktop Justin A. Lemkul
[gmx-users] Uniform Distribution of drug molecules inside water spc216 Justin A. Lemkul
[gmx-users] mktop Justin A. Lemkul
[gmx-users] mktop Justin A. Lemkul
[gmx-users] mktop Justin A. Lemkul
[gmx-users] Error while running methane in water simulation Justin A. Lemkul
[gmx-users] where are Density and Volume? Justin A. Lemkul
[gmx-users] where are Density and Volume? Justin A. Lemkul
[gmx-users] where are Density and Volume? Justin A. Lemkul
[gmx-users] where are Density and Volume? Justin A. Lemkul
[gmx-users] Re: pdb2gmx charmm topology lipid Justin A. Lemkul
[gmx-users] where are Density and Volume? Justin A. Lemkul
[gmx-users] why the pressure fluctuated wildly during the simulation? Justin A. Lemkul
[gmx-users] generation of acetic acid protonated .itp file Justin A. Lemkul
[gmx-users] lipid membrane slicing Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] water passage during simulation Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] about the pulling Justin A. Lemkul
[gmx-users] Re: Fwd: about the pulling Justin A. Lemkul
[gmx-users] g_hbond frames Justin A. Lemkul
[gmx-users] trjconv:solute at the center Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] High temperature Simulation Justin A. Lemkul
[gmx-users] High temperature Simulation Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] High temperature Simulation Justin A. Lemkul
[gmx-users] trjconv:solute at the center Justin A. Lemkul
[gmx-users] High temperature Simulation Justin A. Lemkul
[gmx-users] trjconv:solute at the center Justin A. Lemkul
[gmx-users] High temperature Simulation Justin A. Lemkul
[gmx-users] Interaction energy Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] trjconv:solute at the center Justin A. Lemkul
[gmx-users] lipid membrane slicing Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] solvents in gmx Justin A. Lemkul
[gmx-users] Interaction energy Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] High temperature Simulation Justin A. Lemkul
[gmx-users] Interaction energy Justin A. Lemkul
[gmx-users] RE:Interaction Energy Justin A. Lemkul
[gmx-users] Charmm27 ff for membrane protein simulation Justin A. Lemkul
[gmx-users] Energy Drift Justin A. Lemkul
[gmx-users] reg g_rdf Justin A. Lemkul
[gmx-users] reg g_rdf Justin A. Lemkul
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Justin A. Lemkul
[gmx-users] ZN charge Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] Minimization error Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] lipid membrane slicing Justin A. Lemkul
[gmx-users] Simulating an alkanethiol SAM on gold: atom type not recognized when running pdb2gmx Justin A. Lemkul
[gmx-users] second defaults directive Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] gromacs command help text Justin A. Lemkul
[gmx-users] Using Amber Force Field in gromacs Justin A. Lemkul
[gmx-users] Re: Preparation of the pure lipid system with charmm force field Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] Potential Energy Landscape Justin A. Lemkul
[gmx-users] Re: Preparation of the pure lipid system with charmm force field Justin A. Lemkul
[gmx-users] Re: Preparation of the pure lipid system with charmm force field Justin A. Lemkul
[gmx-users] mismatch in coordinate and topology Justin A. Lemkul
[gmx-users] mismatch in coordinate and topology Justin A. Lemkul
[gmx-users] reg Hydrophobic interaction Justin A. Lemkul
[gmx-users] Re: Preparation of the pure lipid system with charmm force field Justin A. Lemkul
[gmx-users] mismatch in coordinate and topology Justin A. Lemkul
[gmx-users] trjconv - PBC Justin A. Lemkul
[gmx-users] modeling cation-pi box Justin A. Lemkul
[gmx-users] trjconv - PBC Justin A. Lemkul
[gmx-users] Lyzosyme with ligand tutorial Justin A. Lemkul
[gmx-users] modeling cation-pi box Justin A. Lemkul
[gmx-users] Lyzosyme with ligand tutorial Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] nonane solvent Justin A. Lemkul
[gmx-users] Gromacs inquiries Justin A. Lemkul
[gmx-users] how can I get the .top file?? Justin A. Lemkul
[gmx-users] difference between restrained and constrained Justin A. Lemkul
[gmx-users] Normal Mode Analysis Justin A. Lemkul
[gmx-users] position restrained minimization on the one part of a system Justin A. Lemkul
[gmx-users] position restrained minimization on the one part of a system Justin A. Lemkul
[gmx-users] Center of simulation box Justin A. Lemkul
[gmx-users] Normal Mode Analysis Justin A. Lemkul
[gmx-users] convert parameters of Buckingham potential to/from LJ potential Justin A. Lemkul
[gmx-users] Parametrisation of the heteroatomic pdb Justin A. Lemkul
[gmx-users] umbrella sampling Justin A. Lemkul
[gmx-users] Parametrisation of the heteroatomic pdb Justin A. Lemkul
[gmx-users] extending umbrella sampling runs Justin A. Lemkul
[gmx-users] Re: Hbonds - Res - Ligand Justin A. Lemkul
[gmx-users] file.itp for separated molecules Justin A. Lemkul
[gmx-users] Parametrisation of the heteroatomic pdb Justin A. Lemkul
[gmx-users] Parametrisation of the heteroatomic pdb Justin A. Lemkul
[gmx-users] pdb2gmx problem with ACE N-cap Justin A. Lemkul
[gmx-users] Parametrisation of the heteroatomic pdb Justin A. Lemkul
[gmx-users] Parametrisation of the heteroatomic pdb Justin A. Lemkul
[gmx-users] Normal Mode Analysis Justin A. Lemkul
[gmx-users] System heating up during MD run? (Implicit solvent) Justin A. Lemkul
[gmx-users] Number of nodes Justin A. Lemkul
[gmx-users] Adding Hydrogens by pdb2gmx Justin A. Lemkul
[gmx-users] Adding Hydrogens by pdb2gmx Justin A. Lemkul
[gmx-users] Adding Hydrogens by pdb2gmx Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] LINCS crushes Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] Simulation of membrane protein Justin A. Lemkul
[gmx-users] Jarzinsky's inequality from SMD simulation Justin A. Lemkul
[gmx-users] gromacs query Justin A. Lemkul
[gmx-users] RE:RE: gromacs installation Da-Wei Li
[gmx-users] Center of mass: distance restrain for groups Li, Hualin
[gmx-users] Center of mass: distance restrain for groups Li, Hualin
[gmx-users] Reduce the frequency to apply distance restrain Li, Hualin
[gmx-users] RE: gromacs installation Li, Hualin
[gmx-users] Martini force field: elastic network Li, Hualin
[gmx-users] Martini force field: elastic network Li, Hualin
[gmx-users] Martini force field: elastic network Li, Hualin
[gmx-users] CMAP for alanine dipeptide in Charmm27 ff Jianguo Li
[gmx-users] CMAP for alanine dipeptide in Charmm27 ff Jianguo Li
[gmx-users] How to obtain structures with large RMSD? Liu, Liang
[gmx-users] How to obtain structures with large RMSD? Liu, Liang
[gmx-users] How to obtain structures with large RMSD? Liu, Liang
[gmx-users] How to obtain structures with large RMSD? Liu, Liang
[gmx-users] How to obtain structures with large RMSD? Liu, Liang
[gmx-users] High temperature Simulation Daniel Adriano Silva M
[gmx-users] How to obtain and how to use acpype Kavyashree M
[gmx-users] High temperature Simulation Kavyashree M
[gmx-users] High temperature Simulation Kavyashree M
[gmx-users] High temperature Simulation Kavyashree M
[gmx-users] High temperature Simulation Kavyashree M
[gmx-users] High temperature Simulation Kavyashree M
[gmx-users] High temperature Simulation Kavyashree M
[gmx-users] High temperature Simulation Kavyashree M
[gmx-users] High temperature Simulation Kavyashree M
[gmx-users] Number of nodes Kavyashree M
[gmx-users] Number of nodes Kavyashree M
[gmx-users] query on OPLS-2005 Sanku M
[gmx-users] How to convert a gromacs trajectory to Desmond trajectory format Sanku M
[gmx-users] How to convert a gromacs trajectory to Desmond trajectory format Sanku M
[gmx-users] problem with compiling fftw Sanku M
[gmx-users] query on OPLS-2005 Sanku M
[gmx-users] pdb2gmx problem with ACE N-cap Sanku M
[gmx-users] problem with Threading during run Sanku M
[gmx-users] Jarzinsky's inequality from SMD simulation Sanku M
[gmx-users] Jarzinsky's inequality from SMD simulation Sanku M
[gmx-users] failure during compiling gromacs 4.5.5 Ye MEI
Re: Re: [gmx-users] failure during compiling gromacs 4.5.5 Ye MEI
[gmx-users] CHARMM36 force field Giovanni Mancini
[gmx-users] CHARMM 36 force field Giovanni Mancini
[gmx-users] H-bond lifetime with g_hbond Anna Marabotti
[gmx-users] R: Re: H-bond lifetime with g_hbond Anna Marabotti
[gmx-users] Re: atoms jumps from its native position in protein Parthiban Marimuthu
[gmx-users] lipid membrane slicing Igor Marques
[gmx-users] trjconv and -pbc Marzinek, Jan
[gmx-users] gromacs command help text Sikandar Mashayak
[gmx-users] gromacs command help text Sikandar Mashayak
[gmx-users] dihedral restraints documentation David Mobley
[gmx-users] Creating topology with bonds over pbc Wojciech Müller
[gmx-users] polymer chain length and density Juliette N.
[gmx-users] FEP Steven Neumann
[gmx-users] FEP Steven Neumann
[gmx-users] FEP Steven Neumann
[gmx-users] Interaction energy Steven Neumann
[gmx-users] Interaction energy Steven Neumann
[gmx-users] Interaction energy Steven Neumann
[gmx-users] RE:Interaction Energy Steven Neumann
[gmx-users] RE:Interaction Energy Steven Neumann
[gmx-users] Residue - ligand interaction energy Steven Neumann
[gmx-users] trjconv - PBC Steven Neumann
[gmx-users] trjconv - PBC Steven Neumann
[gmx-users] trjconv - PBC Steven Neumann
[gmx-users] trjconv - PBC Steven Neumann
[gmx-users] Hbonds - Res - Ligand Steven Neumann
[gmx-users] Re: Hbonds - Res - Ligand Steven Neumann
[gmx-users] Re: Hbonds - Res - Ligand Steven Neumann
[gmx-users] Nonbonded energy Protein-Ligands Steven Neumann
[gmx-users] 1-week gromacs test at 112x12 cores Maik Nijhuis
[gmx-users] 1-week gromacs test at 112x12 cores Maik Nijhuis
[gmx-users] protein-water distance restraints Francesco Oteri
[gmx-users] mismatch in coordinate and topology Samrat Pal
[gmx-users] mismatch in coordinate and topology Samrat Pal
[gmx-users] mismatch in coordinate and topology Samrat Pal
[gmx-users] generation of acetic acid protonated .itp file Sunita Patel
[gmx-users] Martini force field: elastic network XAvier Periole
[gmx-users] position restrained minimization on the one part of a system Atila Petrosian
[gmx-users] position restrained minimization on the one part of a system Atila Petrosian
[gmx-users] position restrained minimization on the one part of a system Atila Petrosian
[gmx-users] position restrained minimization on the one part of a system Atila Petrosian
[gmx-users] CHARMM36 force field Thomas Piggot
[gmx-users] CHARMM 36 force field Thomas Piggot
[gmx-users] topologies for POPE and DMPE Thomas Piggot
[gmx-users] topologies for POPE and DMPE Thomas Piggot
[gmx-users] Charmm27 ff for membrane protein simulation Thomas Piggot
[gmx-users] Solvent accessible surface area units Sai Pooja
[gmx-users] Slow in double-precision version Sai Pooja
[gmx-users] Slow in double-precision version Sai Pooja
[gmx-users] order parameter Poojari, Chetan
[gmx-users] lipid membrane slicing Poojari, Chetan
[gmx-users] lipid membrane slicing Poojari, Chetan
[gmx-users] lipid membrane slicing Poojari, Chetan
[gmx-users] lipid membrane slicing Poojari, Chetan
[gmx-users] extending umbrella sampling runs Poojari, Chetan
[gmx-users] extending umbrella sampling runs Poojari, Chetan
[gmx-users] RE:RE: gromacs installation Szilárd Páll
[gmx-users] Gromacs: Cloud Vs. Boinc Server? Szilárd Páll
[gmx-users] Gromacs: Cloud Vs. Boinc Server? Szilárd Páll
[gmx-users] Gromacs: Cloud Vs. Boinc Server? Szilárd Páll
[gmx-users] using gromacs with an specific GCC Szilárd Páll
[gmx-users] Link to Intel MKL (fftw) via cmake options Szilárd Páll
[gmx-users] failure during compiling gromacs 4.5.5 Szilárd Páll
[gmx-users] Gromacs-GPU with an Nvidia GeForce GTX 580 error? Szilárd Páll
[gmx-users] Link to Intel MKL (fftw) via cmake options Szilárd Páll
[gmx-users] Link to Intel MKL (fftw) via cmake options Szilárd Páll
[gmx-users] Fatal error in MPI_Allreduce upon REMD restart Szilárd Páll
[gmx-users] failure during compiling gromacs 4.5.5 Szilárd Páll
[gmx-users] Gromacs-GPU with an Nvidia GeForce GTX 580 error? Szilárd Páll
[gmx-users] g_hbond Mr Bernard Ramos
[gmx-users] g_hbond Mr Bernard Ramos
[gmx-users] Gromacs 4.5.5 installation on Cygwin Mr Bernard Ramos
[gmx-users] Gromacs 4.5.5 installation with Cygwin Mr Bernard Ramos
[gmx-users] New DSSP vs do_dssp (gromacs-4.5.4) Ahmad Randy
[gmx-users] Unable to download gromacs-4.5.5.tar.gz Rasale, Anupama
[gmx-users] Implicit solvation Soumya Lipsa Rath
[gmx-users] Problem in the inclusion of Potassium ion topology Venkat Reddy
[gmx-users] REMD and GBSA Ben Reynwar
[gmx-users] REMD and GBSA Ben Reynwar
[gmx-users] Energy Drift Ben Reynwar
[gmx-users] Fatal error in MPI_Allreduce upon REMD restart Ben Reynwar
[gmx-users] Fatal error in MPI_Allreduce upon REMD restart Ben Reynwar
[gmx-users] Fatal error in MPI_Allreduce upon REMD restart Ben Reynwar
[gmx-users] How to obtain structures with large RMSD? KS Rotondi
[gmx-users] no economic problems since i started it... X Rules
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Sapna Sarupria
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Sapna Sarupria
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Sapna Sarupria
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Sapna Sarupria
[gmx-users] Gromacs versions 4.0.5 and 4.5.4 Sapna Sarupria
[gmx-users] Forcefield for Lipids Saumya
[gmx-users] RE: How to obtain structures with large RMSD? Ehud Schreiber
[gmx-users] Updating charges on-the-fly J. Nathan Scott
[gmx-users] Getting an .edr file from trajectory SebastianWaltz
[gmx-users] acpype generated different tip3p water paramters Yun Shi
[gmx-users] different tip3p water parameters between AMBER and GROMACS Yun Shi
[gmx-users] reasons for slow computation? Yun Shi
[gmx-users] Re: reasons for slow computation? Yun Shi
[gmx-users] not guaranteed to be binary identical ? Yun Shi
[gmx-users] Re: reasons for slow computation? Yun Shi
[gmx-users] Re: reasons for slow computation? Yun Shi
[gmx-users] would trjcat correctly delete extra frames? Yun Shi
[gmx-users] position restraints on heavy atoms or all? Yun Shi
[gmx-users] Question about Justin's Free Energy Tutorial Michael Shirts
[gmx-users] FEP Michael Shirts
[gmx-users] FEP Michael Shirts
[gmx-users] Adjust the screen's output frequency David van der Spoel
[gmx-users] solvents in gmx David van der Spoel
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Charmm27 ff for membrane protein simulation James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Charmm27 ff for membrane protein simulation James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Preparation of the pure lipid system with charmm force field James Starlight
[gmx-users] Preparation of the pure lipid system with charmm force field James Starlight
[gmx-users] Re: Preparation of the pure lipid system with charmm force field James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Re: Preparation of the pure lipid system with charmm force field James Starlight
[gmx-users] Re: Preparation of the pure lipid system with charmm force field James Starlight
[gmx-users] Re: Preparation of the pure lipid system with charmm force field James Starlight
[gmx-users] Re: Preparation of the pure lipid system with charmm force field James Starlight
[gmx-users] Non-covalent interactions in the protein-ligand systems James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Lyzosyme with ligand tutorial James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Lyzosyme with ligand tutorial James Starlight
[gmx-users] Lyzosyme with ligand tutorial James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Mismatching in Bergers DMPC bilayer lipid topology James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Parametrisation of the heteroatomic pdb James Starlight
[gmx-users] Structure preparation for the simulation James Starlight
[gmx-users] Normal Mode Analysis James Starlight
[gmx-users] Prosessing of the pre-eqilibrated lipid bilayer James Starlight
[gmx-users] Adding Hydrogens by pdb2gmx James Starlight
[gmx-users] Adding Hydrogens by pdb2gmx James Starlight
[gmx-users] Adding Hydrogens by pdb2gmx James Starlight
[gmx-users] Re: Prosessing of the pre-eqilibrated lipid bilayer James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] Simulation of membrane protein James Starlight
[gmx-users] quick question about "direction_periodic" Natalie Stephenson
[gmx-users] Potential Energy Landscape Natalie Stephenson
[gmx-users] Potential Energy Landscape Natalie Stephenson
[gmx-users] Spherical constraint (spherical force) Mikhail Stukan
[gmx-users] Dihedral transition times for a non-protein structure Giulio Tesei
[gmx-users] Dihedral transition times for a non-protein structure Giulio Tesei
[gmx-users] about the pulling Tom
[gmx-users] Fwd: about the pulling Tom
[gmx-users] Re: Fwd: about the pulling Tom
[gmx-users] how to calculate the force between two groups Tom
[gmx-users] Re: how to calculate the force between two groups (Mark Abraham) Tom
[gmx-users] gromacs query Anushree Tripathi
[gmx-users] partial atomic charges MARY VARUGHESE
[gmx-users] partial atomic charges MARY VARUGHESE
[gmx-users] NVT Equilibration getting blown up Ravi Kumar Venkatraman
[gmx-users] NVT equilibration of Ethanol in OPLSAA. Ravi Kumar Venkatraman
[gmx-users] NVT equilibration of ethanol in OPLSAA ff Ravi Kumar Venkatraman
[gmx-users] NVT equilibration. Ravi Kumar Venkatraman
[gmx-users] NVT Equilibration Ravi Kumar Venkatraman
[gmx-users] Regarding Density Ravi Kumar Venkatraman
[gmx-users] Regarding MKTOP Ravi Kumar Venkatraman
[gmx-users] lost ngmx Victor
[gmx-users] nonane solvent Vijayaraj
[gmx-users] umbrella sampling Vijayaraj
[gmx-users] Re: umbrella sampling Vijayaraj
[gmx-users] Link to Intel MKL (fftw) via cmake options Mirco Wahab
[gmx-users] Link to Intel MKL (fftw) via cmake options Mirco Wahab
[gmx-users] Link to Intel MKL (fftw) via cmake options Mirco Wahab
[gmx-users] oops, s/gcc 4.5.1/icc 12.1.0/ Mirco Wahab
[gmx-users] Link to Intel MKL (fftw) via cmake options Mirco Wahab
[gmx-users] Link to Intel MKL (fftw) via cmake options Mirco Wahab
[gmx-users] Simulating an alkanethiol SAM on gold: atom type not recognized when running pdb2gmx Olivia Waring
[gmx-users] NVT equilibration of Ethanol in OPLSAA. Dallas Warren
[gmx-users] RE: NVT EQUILIBRATION Dallas Warren
[gmx-users] NVT Equilibration Dallas Warren
[gmx-users] Regarding Density Dallas Warren
[gmx-users] Ligand scattered out of the protein Dallas Warren
[gmx-users] Implicit solvent problems Dallas Warren
[gmx-users] RMSD bonds and angles Tsjerk Wassenaar
[gmx-users] angke definition Tsjerk Wassenaar
[gmx-users] Questions about dodecahedron box Tsjerk Wassenaar
[gmx-users] "Simulation" of a crystal Tsjerk Wassenaar
[gmx-users] RMSF calculations Tsjerk Wassenaar
[gmx-users] How to obtain structures with large RMSD? Tsjerk Wassenaar
[gmx-users] How to obtain structures with large RMSD? Tsjerk Wassenaar
[gmx-users] Re: reasons for slow computation? Tsjerk Wassenaar
[gmx-users] Martini force field: elastic network Tsjerk Wassenaar
[gmx-users] would trjcat correctly delete extra frames? Tsjerk Wassenaar
[gmx-users] trjconv:solute at the center Tsjerk Wassenaar
[gmx-users] trjconv:solute at the center Tsjerk Wassenaar
[gmx-users] Reference structure for g_covar Tsjerk Wassenaar
[gmx-users] Re: Re: Reference structure for g_covar Tsjerk Wassenaar
[gmx-users] trjconv - PBC Tsjerk Wassenaar
[gmx-users] trjconv - PBC Tsjerk Wassenaar
[gmx-users] Simulation of membrane protein Tsjerk Wassenaar
[gmx-users] Normal Mode Analysis Tsjerk Wassenaar
[gmx-users] position restrained minimization on the one part of a system Tsjerk Wassenaar
[gmx-users] trjconv and -pbc Tsjerk Wassenaar
[gmx-users] trjconv and -pbc Tsjerk Wassenaar
[gmx-users] trjconv and -pbc Tsjerk Wassenaar
[gmx-users] trjconv and -pbc Tsjerk Wassenaar
[gmx-users] trjconv and -pbc Tsjerk Wassenaar
[gmx-users] trjconv and -pbc Tsjerk Wassenaar
[gmx-users] protein-water distance restraints Markus Weingarth
[gmx-users] protein-water distance restraints Markus Weingarth
[gmx-users] dihedral restraint violation output Markus Weingarth
[gmx-users] REMD output Wright, Louise
[gmx-users] where are Density and Volume? Yao Yao
[gmx-users] where are Density and Volume? Yao Yao
[gmx-users] where are Density and Volume? Yao Yao
[gmx-users] where are Density and Volume? Yao Yao
[gmx-users] g_hbond frames Yao Yao
[gmx-users] solvents in gmx Yao Yao
[gmx-users] the order parameter obtained by g_angle Z.Xiao
[gmx-users] some questions about calculation of dipole ACF RuiTing Zhang
[gmx-users] Using CHARMM force fields in Gromacs Jernej Zidar
[gmx-users] 1-week gromacs test at 112x12 cores Matthew Zwier
[gmx-users] NVT Equilibration Matthew Zwier
[gmx-users] antifreeze water in martini coarse-grained mohammad agha
[gmx-users] mktop ram bio
Fwd: [gmx-users] mktop ram bio
[gmx-users] mktop ram bio
[gmx-users] mktop ram bio
[gmx-users] mktop/swissparam ram bio
[gmx-users] mktop ram bio
[gmx-users] pdb2gmx charmm topology lipid ram bio
[gmx-users] POPC bilayer with Charmmff ram bio
[gmx-users] MD with membrane protein elisa carli
[gmx-users] water passage during simulation madhumita das
[gmx-users] second defaults directive madhumita das
[gmx-users] Using Amber Force Field in gromacs madhumita das
[gmx-users] Minimization error aiswarya.pawar at gmail.com
[gmx-users] make_ndx and rdf oguz gurbulak
[gmx-users] how to calculate the normal of plane for Tryptophan or how to get the comparison matrix in g_rms xiaodong huang
[gmx-users] how to calculate the normal of plane for Tryptophan or how to get the comparison matrix in g_rms xiaodong huang
[gmx-users] About the GROMOS96 parameters files intra\sa175950
[gmx-users] About the GROMOS96 parameters files intra\sa175950
[gmx-users] (no subject) pratik kaku
[gmx-users] TIP5P calculating the dummy positions pratik kaku
[gmx-users] TIP5P calculating the dummy positions pratik kaku
[gmx-users] How to obtain and how to use acpype leila karami
[gmx-users] How to obtain and how to use acpype leila karami
[gmx-users] Uniform Distribution of drug molecules inside water spc216 meisam valizadeh kiamahalleh
[gmx-users] Re: gmx-users Digest, Vol 90, Issue 48 meisam valizadeh kiamahalleh
[gmx-users] Ensemble averaged restraints santhu kumar
[gmx-users] average structure larifsofiene
[gmx-users] Questions about dodecahedron box zhenlong li
[gmx-users] Questions about dodecahedron box zhenlong li
[gmx-users] Center of simulation box zhenlong li
[gmx-users] Implicit solvent problems liaoxyi
[gmx-users] Re: Implicit solvent problems liaoxyi
[gmx-users] "Simulation" of a crystal auryn_valemig at libero.it
R: Re: [gmx-users] "Simulation" of a crystal auryn_valemig at libero.it
[gmx-users] MD with membrane protein lina
[gmx-users] snap shot lina
[gmx-users] A quick Q: How to get the history in make_ndx lina
[gmx-users] Re: topology error lina
[gmx-users] lipid membrane slicing lina
[gmx-users] New DSSP vs do_dssp (gromacs-4.5.4) lina
[gmx-users] Normal Mode Analysis lina
[gmx-users] Domain decomposition error in alchemical free energy perturbation MD lina
[gmx-users] trjconv and -pbc lina
[gmx-users] trjconv and -pbc lina
[gmx-users] trjconv and -pbc lina
[gmx-users] trjconv and -pbc lina
[gmx-users] trjconv and -pbc lina
[gmx-users] trjconv and -pbc lina
[gmx-users] lost ngmx lina
[gmx-users] problem with Threading during run lina
[gmx-users] Umbrella sampling COM distance nahren manuel
[gmx-users] Reference structure for g_covar vivek modi
[gmx-users] Re: Re: Reference structure for g_covar vivek modi
[gmx-users] Re: Re: Re: Reference structure for g_covar vivek modi
[gmx-users] error_in topology balaji nagarajan
[gmx-users] topology_for_3 point model balaji nagarajan
[gmx-users] problem_with_rewritting_pdb balaji nagarajan
[gmx-users] protein_model_refinement shahid nayeem
[gmx-users] Protein_model_refinement shahid nayeem
[gmx-users] Gromacs inquiries cuong nguyen
[gmx-users] Gromacs inquiries cuong nguyen
[gmx-users] (no subject) eyem noob
[gmx-users] iron sulphur cluster francesco oteri
[gmx-users] iron sulphur cluster francesco oteri
[gmx-users] ZN charge francesco oteri
[gmx-users] Minimization error aiswarya pawar
[gmx-users] increase the time frame aiswarya pawar
[gmx-users] increase the time frame aiswarya pawar
[gmx-users] FEP mohsen ramezanpour
[gmx-users] RE:Data Analysis lloyd riggs
[gmx-users] Gromacs: Cloud Vs. Boinc Server? lloyd riggs
[gmx-users] Re: lloyd riggs
[gmx-users] Ree: Gromacs: Cloud Vs. Boinc Server lloyd riggs
[gmx-users] Re:SMD Vs. A and B state lloyd riggs
[gmx-users] RE:Free energy methods Protein-Protein lloyd riggs
[gmx-users] RE:Interaction Energy lloyd riggs
[gmx-users] reg plumed gromacs vidhya sankar
[gmx-users] About pair distribution function vidhya sankar
[gmx-users] reg g_rdf vidhya sankar
[gmx-users] reg g_rdf vidhya sankar
[gmx-users] reg Hydrophobic interaction vidhya sankar
[gmx-users] difference between restrained and constrained shahab shariati
[gmx-users] Error while running methane in water simulation vivek sharma
[gmx-users] Regarding 1-d free energy profile from g_sham bipin singh
[gmx-users] Regarding 1-d free energy profile from g_sham bipin singh
[gmx-users] Implicit solvation bipin singh
[gmx-users] CHARMM GUI to Gromacs bipin singh
[gmx-users] High temperature Simulation bipin singh
[gmx-users] High temperature Simulation bipin singh
[gmx-users] High temperature Simulation bipin singh
[gmx-users] some problems when using g_membed mircial at sjtu.edu.cn
[gmx-users] Difference in hydrogen bonds between different softwares larif sofiene
[gmx-users] trjconv and -pbc vijaya subramanian
[gmx-users] pull code problem: between protofilaments chris.neale at utoronto.ca
[gmx-users] RE:How to change the screen's output frequency? chris.neale at utoronto.ca
[gmx-users] umbrella sampling chris.neale at utoronto.ca
[gmx-users] Mismatching in Bergers DMPC bilayer lipid topology chris.neale at utoronto.ca
[gmx-users] error while energy minimization with the protein fixed prakash verma
[gmx-users] atom names in ffbonded.itp (oplsaa.ff) mu xiaojia
[gmx-users] improper OPLS dihedrals in gromacs mu xiaojia
[gmx-users] Minimization error mu xiaojia
[gmx-users] RMSD bonds and angles ahmet yıldırım
[gmx-users] RMSD bonds and angles ahmet yıldırım
[gmx-users] heteroatom not to be a ligand ahmet yıldırım
[gmx-users] RMSD bonds and angles ahmet yıldırım
[gmx-users] RMSD bonds and angles ahmet yıldırım
[gmx-users] calculation time ahmet yıldırım
[gmx-users] calculation time ahmet yıldırım
[gmx-users] calculation time ahmet yıldırım
[gmx-users] CMAP for alanine dipeptide in Charmm27 ff César Ávila
[gmx-users] Re: CMAP for alanine dipeptide in Charmm27 ff César Ávila
[gmx-users] CMAP for alanine dipeptide in Charmm27 ff César Ávila
[gmx-users] CMAP for alanine dipeptide in Charmm27 ff César Ávila
[gmx-users] angke definition Алексей Раевский
[gmx-users] cyclosporine A Алексей Раевский
[gmx-users] Re: gmx-users Digest, Vol 90, Issue 82 Алексей Раевский
[gmx-users] MD duration Алексей Раевский
[gmx-users] ATP+Mg Алексей Раевский
[gmx-users] g_dipoles with net charge 李浩
[gmx-users] Adjust the screen's output frequency 杜波
[gmx-users] RE:How to change the screen's output frequency? 杜波
[gmx-users] how to install the gromacs-4.5.5 with the gpu on the linux 杜波
[gmx-users] why the pressure fluctuated wildly during the simulation? 杜波
[gmx-users] do Shell Molecular Dynamics with GROMACS 杜波

Last message date: Mon Oct 31 23:42:51 CET 2011
Archived on: Thu Nov 14 12:11:47 CET 2013

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