[gmx-users] box dimension

[Nilesh Dhumal]

Hello,

I have saved the coordinates of snapshot from trajectory in pdb file.

The dimesnion of box in pdb file are
32.805   32.805   32.805  90.00  90.00  90.00 P 1

I am trying to find  atoms close to center of box.

there are  atoms whose distance from center is more that ~17 A. My center
coordinates are 0.0 0.0 0.0.

How is it possible?

I am using Gromacs 4.0.7 version.

Thanks

Nilesh