[gmx-users] solvents in gmx

[David van der Spoel]

On 2011-10-17 22:58, Justin A. Lemkul wrote:
>
>
> Yao Yao wrote:
>> Hi Gmxers,
>>
>> Is there a way I can check all the kinds of solvents in gromacs? Apart
>> from water, ethanol, ...,
>> are there any Glycerol, Treholose, ....
>>
>
> There likely aren't many. Anything available would be in the force field
> subdirectory for whatever force field you want. Others may be available
> on the User Contributions section of the Gromacs website.
>
> -Justin
>
We have just submitted a paper about organic liquids. We provide boxes 
for 146 liquids and corresponding topologies. The systems have been 
equilibrated using GAFF and OPLS/AA. You can find these boxes at 
http://virtualchemistry.org. Please check back later for information on 
the corresponding paper.

-- 
David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
spoel at xray.bmc.uu.se    http://folding.bmc.uu.se