[gmx-users] Re: Dear Chaban lincs warning

[Dr. Vitaly V. Chaban]

ahmet yıldırım:

If you want a personal mentoria, you will need to pay for it first. If
you strive to get a FREE help, all correspondence should be kept in
the mailing list to save up an archive for other gromacs users.

Dr. Vitaly V. Chaban, 430 Hutchison Hall, Chem. Dept.
Univ. Rochester, Rochester, New York 14627-0216
THE UNITED STATES OF AMERICA



2011/10/31 ahmet yıldırım <ahmedo047 at gmail.com>:
> Please, dont send any reply. I dont want your helps. You send to gmx user
> list my mail without permission from me :(:(:(. Please dont send me any
> mail/reply
>
>
>
> 31 Ekim 2011 09:27 tarihinde ahmet yıldırım <ahmedo047 at gmail.com> yazdı:
>>
>> Dear Dr. Chaban,
>>
>> Firstly, thanks for your reply. I send you the input files that I used.
>> Please look at attached files. By the way, I am using Gromacs 4.5.3
>>
>> Regards
>>
>>
>>
>> 30 Ekim 2011 02:53 tarihinde Dr. Vitaly V. Chaban <vvchaban at gmail.com>
>> yazdı:
>>>
>>> Hello Ahmet:
>>>
>>> The warnings originating from the LINCS algorithm are dee to either
>>> incorrect topology (TOP file) of certain particle or bad initial
>>> configuration (GRO file).
>>>
>>> If you don't provide this information about your problematic system,
>>> there is no chance to help you.
>>>
>>> --
>>> Dr. Vitaly V. Chaban, 430 Hutchison Hall, Chem. Dept.
>>> Univ. Rochester, Rochester, New York 14627-0216
>>> THE UNITED STATES OF AMERICA
>>>
>>>
>>>
>>> 2011/10/29 ahmet yıldırım <ahmedo047 at gmail.com>:
>>> > Dear Dr. Chaban,
>>> >
>>> > I am studying on protein modelling using Gromacs software for 1-2
>>> > years. I
>>> > have lincs warning error. I obtained the error "lincs warning" after
>>> > "mdrun
>>> > -deffnm protein-RUN" (finally step). I could not figure out this
>>> > problem for
>>> > weeks :-(((
>>> >
>>> > If can you help me I will be very very happy? :-(
>>> >
>>> > Sincerely yours
>>> >
>>> > Department of Physics, Siirt University, Siirt, Turkey
>>> >
>>> > --
>>> > Dr.Ahmet YILDIRIM
>>> >
>>
>>
>>
>> --
>> Ahmet YILDIRIM
>
>
>
> --
> Ahmet YILDIRIM
>