[gmx-users] 3D pressure profile of a bilayer

Shou-Chuang Yang shcyang at ucdavis.edu
Wed Sep 7 07:07:56 CEST 2011


Dear gmx-users,

Could anyone help me with the calculation of 3D pressure profile in a
function of y?
I used the provided gromacs-4.0.2_localpressure for my calculatioin. It
calculate
the 3D pressure profile as a function of z (the default setting of bilayer
normal
is z-direction).

In my case, I have a bilayer which rotate at the first few nano second run
and remained normal to y-direction for the rest. How can I obtain a 3D
pressure analysis
along the y-direction?
I really appreciated your help!

Thanks,
Joanne
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