[gmx-users] Problem in VMD

[meisam valizadeh kiamahalleh]

Dear Gmx users
I have run MD on carbon nanotube with solvated drug molecules inside and
outside the tubes. Kindly would you please let me know how I
can visualize and calculate the amount of molecules only inside the carbon
nanotube during MD process. May I know what keywords I should use in graph
presentation?
or
Do you suggest any other software to solve this problem?

Thank you very much
Kind regards

Meisam
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