[gmx-users] residue numbering different

Mark Abraham Mark.Abraham at anu.edu.au
Fri Sep 16 07:27:10 CEST 2011

On 16/09/2011 3:21 PM, aiswarya pawar wrote:
> Hi Users,
> When i list the residues in a index file it shows a numbering of 
> residues and when open the same protein in VMD and check the residue 
> numbering its different. i want to visualise the protein in VMD and 
> select a residue number from VMD and use in gromacs ie want to make an 
> index file in gromacs so how would go about.

Try genconf -renumber


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