[gmx-users] residue numbering different

[Mark Abraham]

On 16/09/2011 3:21 PM, aiswarya pawar wrote:
> Hi Users,
>
> When i list the residues in a index file it shows a numbering of 
> residues and when open the same protein in VMD and check the residue 
> numbering its different. i want to visualise the protein in VMD and 
> select a residue number from VMD and use in gromacs ie want to make an 
> index file in gromacs so how would go about.

Try genconf -renumber

Mark