[gmx-users] residue numbering different

Jianguo Li ljggmx at yahoo.com.sg
Fri Sep 16 07:31:07 CEST 2011

The first residue number in VMD is 0, not 1.

From: aiswarya pawar <aiswarya.pawar at gmail.com>
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
Sent: Friday, 16 September 2011 1:21 PM
Subject: [gmx-users] residue numbering different

Hi Users,

When i list the residues in a index file it shows a numbering of residues and when open the same protein in VMD and check the residue numbering its different. i want to visualise the protein in VMD and select a residue number from VMD and use in gromacs ie want to make an index file in gromacs so how would go about.


gmx-users mailing list    gmx-users at gromacs.org
Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-request at gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110916/781a816a/attachment.html>

More information about the gromacs.org_gmx-users mailing list