[gmx-users] error while install GMX4.5.5

zhongjin zhongjin1000 at yahoo.com.cn
Wed Sep 21 11:27:08 CEST 2011


Dear GMX users:
While I am installing gmx4.5.5, an error occured after "make" command :
cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -msse2 -funroll-all-loops -std=gnu99 -pthread -I./include -o .libs/grompp grompp.o  -L/home/hzj1000/software/fftw/lib ./.libs/libgmxpreprocess.so /home/hzj1000/gromacs-4.5.5/src/mdlib/.libs/libmd.so ../mdlib/.libs/libmd.so /home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so ../gmxlib/.libs/libgmx.so -ldl -lnsl -lm  -Wl,--rpath -Wl,/home/hzj1000/software/GMX/gromacs4.5.5/lib
/home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so: undefined reference to `pthread_setaffinity_np'
collect2: ld returned 1 exit status
make[3]: *** [grompp] Error 1
make[3]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src/kernel'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src'
 
Zhongjin He
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