[gmx-users] error while install GMX4.5.5

[Mark Abraham]

On 21/09/2011 7:27 PM, zhongjin wrote:
> Dear GMX users:
> While I am installing gmx4.5.5, an error occured after "make" command :
> cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused 
> -msse2 -funroll-all-loops -std=gnu99 -pthread -I./include -o 
> .libs/grompp grompp.o  -L/home/hzj1000/software/fftw/lib 
> ./.libs/libgmxpreprocess.so 
> /home/hzj1000/gromacs-4.5.5/src/mdlib/.libs/libmd.so 
> ../mdlib/.libs/libmd.so 
> /home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so 
> ../gmxlib/.libs/libgmx.so -ldl -lnsl -lm  -Wl,--rpath 
> -Wl,/home/hzj1000/software/GMX/gromacs4.5.5/lib
> /home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so: undefined 
> reference to `pthread_setaffinity_np'
> collect2: ld returned 1 exit status
> make[3]: *** [grompp] Error 1
> make[3]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src/kernel'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src'
>

This shouldn't happen. What compiler and hardware? configure or CMake? 
What command lines?

Mark
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