[gmx-users] Monitoring of Salt bridges during simulation Run

[bharat gupta]

You can use g_saltbr option , http://manual.gromacs.org/online/g_saltbr.html

On Thu, Apr 5, 2012 at 5:23 PM, James Starlight <jmsstarlight at gmail.com>wrote:

> Dear Gromacs Users!
>
>
> I'd like to monitor origin and destabilisation of salt-bridges during
> simulation time. In particular I want to define some charged residues
> within selection groups to monitor both of intra-protein as well as
> protein-protein interactions. In past I've used only g_hbond<http://manual.gromacs.org/online/g_hbond.html>utillity to monitor Hbonds within selection. Is there any specified program
> for such task but with salt-bridges only ?
>
>
> Thanks for help,
>
> James
>
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-- 
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
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Pusan National University
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