[gmx-users] Monitoring of Salt bridges during simulation Run

[Peter C. Lai]

g_saltbr?

If you have salt bridges you already know about and want to look at, you
can always go with g_dist per pair manually.

On 2012-04-05 12:23:02PM +0400, James Starlight wrote:
> Dear Gromacs Users!
> 
> 
> I'd like to monitor origin and destabilisation of salt-bridges during
> simulation time. In particular I want to define some charged residues
> within selection groups to monitor both of intra-protein as well as
> protein-protein interactions. In past I've used only
> g_hbond<http://manual.gromacs.org/online/g_hbond.html>utillity to
> monitor Hbonds within selection. Is there any specified program
> for such task but with salt-bridges only ?
> 
> 
> Thanks for help,
> 
> James

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Peter C. Lai			| University of Alabama-Birmingham
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