[gmx-users] the g_rms function after we trjcat the trajectory files before and after extension

Acoot Brett acootbrett at yahoo.com
Fri Apr 6 08:57:41 CEST 2012

Dear All,
Before and after extention we have 2 trajectorty files, and by trjcat we got we, then we can do the g_rms
g_rms -s *.tpr -f *_noPBC.xtc -o rmsd.xvg -tu ns
But here for the g_rms command I find no matter whether we use the  *.tpr of the initiation of the production MD, or the *.tpr for the initiation of the extension part, the rmsd.xvg curves seems same.
Will you please give some comment on it?
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