[gmx-users] installation issues

anupam sinha anupam.contact at gmail.com
Tue Apr 17 15:12:38 CEST 2012

Dear All,
              I have tried installing gromacs (after installing fftw3
library)on a GPU system using the following :

./configure --with-fft=fftw3 --enable-float

After I type "make" I get the following error after sometime.

/usr/bin/ld: /home/anupam/fftw-3.3.1/.libs/libfftw3f.a(apiplan.o):
relocation R_X86_64_32 against `a local symbol' can not be used when making
a shared object; recompile with -fPIC
/home/anupam/fftw-3.3.1/.libs/libfftw3f.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[3]: *** [libmd.la] Error 1
make[3]: Leaving directory `/home/anupam/gromacs-4.5.5/src/mdlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/anupam/gromacs-4.5.5/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/anupam/gromacs-4.5.5/src'
make: *** [all-recursive] Error 1

Please help me out in this regard.



Graduate Student,
Laboratory of Computational Biology,
Center For DNA Fingerprinting And Diagnostics,
4-1-714 to 725/2, Tuljaguda complex
Mozamzahi Road, Nampally,
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