[gmx-users] Visualizing a process

[Justin Lemkul]

On 8/9/12 2:12 PM, Shima Arasteh wrote:
> Hi,
>
> Is it possible to view the process of a NPT or NVT equilibration? Which command in gromacs can generate a .xtc output?
>

Only mdrun writes .xtc files of simulations.  As far as I know, one cannot watch 
the simulation in real time but .xtc files can be visualized in a variety of 
viewing programs after the simulation is complete.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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