[gmx-users] Visualizing a process

Justin Lemkul jalemkul at vt.edu
Thu Aug 9 20:15:59 CEST 2012

On 8/9/12 2:12 PM, Shima Arasteh wrote:
> Hi,
> Is it possible to view the process of a NPT or NVT equilibration? Which command in gromacs can generate a .xtc output?

Only mdrun writes .xtc files of simulations.  As far as I know, one cannot watch 
the simulation in real time but .xtc files can be visualized in a variety of 
viewing programs after the simulation is complete.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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