[gmx-users] Re: number of coordinates in coordinate file (system_inflated.gro, 9331) number of coordinates in coordinate file does not match topology

leonines bhavaniprasad_vipperla at live.com
Fri Aug 10 09:28:27 CEST 2012

hello justin,
I got one more error, please help me out again.
I got the em.gro instead of confout.gro. I reached an area per lipid of ~52
for POPE bi layer.
Next i tried to  add ions to the system after solvating with water. i get
following error.
Program grompp, VERSION 4.5.4
Source code file: /build/buildd/gromacs-4.5.4/src/kernel/grompp.c, line: 523
Fatal error:
number of coordinates in coordinate file (PRO_POPE_sol.gro, 101878)
             does not match topology (topol.top, 19707)
Is this difference in the number of atoms due to error in solvating.
I haven't got this error before.please suggest me what went wrong.

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