[gmx-users] Re: atom numbering

[Justin Lemkul]

On 8/17/12 10:41 AM, dariush wrote:
> genconf -renumber works well for renumbering. However, after minimization
> of that renumbered .gro file, I have previous numbering.
>

You always will.  The numbering is read from the topology, so simulation output 
will always be numbered that way and you will have to renumber anything you want 
to visualize.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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