[gmx-users] Re: atom numbering

Justin Lemkul jalemkul at vt.edu
Fri Aug 17 17:02:40 CEST 2012

On 8/17/12 10:41 AM, dariush wrote:
> genconf -renumber works well for renumbering. However, after minimization
> of that renumbered .gro file, I have previous numbering.

You always will.  The numbering is read from the topology, so simulation output 
will always be numbered that way and you will have to renumber anything you want 
to visualize.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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