[gmx-users] Topology- make bonds with certain cut-off distance

mohan maruthi sena maruthi.sena at gmail.com
Sat Aug 25 06:54:28 CEST 2012

Hi all,
           I want build a toplogy for a protein , for which , each and
every atom  has to  make bonds with other atoms with in certain
specified cut-off distance. How can i do this ?

Please suggest me a way,

Thanks in advance,

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