[gmx-users] (no subject)

[Justin Lemkul]

On 8/28/12 1:25 PM, Lingyun Wang wrote:
> Hi all,
>
> I want to model a protein on the surface of a bilayer membrane. Is it reasonable to add less water molecules to the bilayer side without protein? Or the water should be the same on both side of membrane? Thanks.
>

Given periodic boundaries conditions, the amount of water on either "side" is 
irrelevant.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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