[gmx-users] do_dssp segmental fault
ask.archana at gmail.com
Thu Aug 30 09:50:51 CEST 2012
I recently installed dssp for Gromacs 4.5.4 on RHEL4
You have to just copy the dsspcmbi downloaded from linux distribution to
/usr/local/bin (No need to set an environment variable DSSP if dspcmbi is
in /usr/loca/bin as it is the default path for gromacs)
Rename the dsspcmbi to dssp
chmod +x dssp is required if doesn't show as executable. Run do_dssp at
any other location. This worked for me.
On Mon, Aug 20, 2012 at 10:49 AM, Debajyoti Ghosh <ghosh.dg at gmail.com>wrote:
> Dear gmx users,
> I recently upgraded the operating system to Ubuntu 12 and re-installed
> Gromacs 4.5.5. But I could not re-install dssp.
> I did the following:
> (1) I downloaded dsspcmbi from http://swift.cmbi.ru.nl/gv/dssp/
> Went to distributions- DSSPold - Linux Distributions to download
> dsspcmbi. (2) Moved to /usr/local/bin
> (3) sudo chmod +x dsspcmbi
> - do_dssp did not work.
> Then I (a) renamed dsspcmbi to dssp (b) ln -s dsspcmbi dssp
> - do_dssp still did not work.
> Then I did : export DSSP=/usr/local/bin/dssp
> - do_dssp still did not work as well.
> Please advise.
> gmx-users mailing list gmx-users at gromacs.org
> * Only plain text messages are allowed!
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Junior Research Fellow,
Biomedical Informatics Centre,
NIRRH (ICMR), Parel
More information about the gromacs.org_gmx-users