[gmx-users] Error during compilation of Gromacs-4.5.5

BHARATI DUTTA bharati.dutta at piramal.com
Mon Dec 10 07:32:32 CET 2012


The following error pops up during compilation of Gromacs-4.5.5 :

/home/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so: undefined reference to 
`pthread_setaffinity_np'. Could you please help me fix it?

I am installing it on 

uname -m = x86_64
uname -r = 2.6.9-5.ELsmp
uname -s = Linux
uname -v = #1 SMP Wed Jan 5 19:29:47 EST 2005
cc (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)

glibc : glibc -2.3.4 

Thanks & Regards - Bharati

Bharati Dutta
Research Associate
Discovery Informatics
Piramal Life Sciences Limited
1, Nirlon Complex,
Goregaon Link Road,
Mumbai, Maharashtra 400 063
bharati.dutta at piramal.com

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