[gmx-users] Index file

Chandan Choudhury iitdckc at gmail.com
Mon Dec 31 08:37:34 CET 2012

On Mon, Dec 31, 2012 at 11:59 AM, Shima Arasteh <shima_arasteh2001 at yahoo.com
> wrote:

> Dear all,
> I had a .pdb file containing protein, popc, and ions. So I used editconf
> to make a .gro file. But when I want to make an index file, 2 CL ions are
> not identified, so I can not choose it.
> use make_ndx f .pdb

> Sincerely,
> Shima
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Chandan kumar Choudhury
NCL, Pune

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