[gmx-users] Index file

Chandan Choudhury iitdckc at gmail.com
Mon Dec 31 08:38:36 CET 2012


On Mon, Dec 31, 2012 at 1:07 PM, Chandan Choudhury <iitdckc at gmail.com>wrote:

>
>
>
> On Mon, Dec 31, 2012 at 11:59 AM, Shima Arasteh <
> shima_arasteh2001 at yahoo.com> wrote:
>
>> Dear all,
>> I had a .pdb file containing protein, popc, and ions. So I used editconf
>> to make a .gro file. But when I want to make an index file, 2 CL ions are
>> not identified, so I can not choose it.
>>
>> use make_ndx f .pdb
>

use make_ndx -f .pdb

>
>
>> Sincerely,
>> Shima
>> --
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>
>
>
>
> --
> Chandan kumar Choudhury
> NCL, Pune
> INDIA
>
>


--
Chandan kumar Choudhury
NCL, Pune
INDIA



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