[gmx-users] Index file

[Chandan Choudhury]

On Mon, Dec 31, 2012 at 1:07 PM, Chandan Choudhury <iitdckc at gmail.com>wrote:

>
>
>
> On Mon, Dec 31, 2012 at 11:59 AM, Shima Arasteh <
> shima_arasteh2001 at yahoo.com> wrote:
>
>> Dear all,
>> I had a .pdb file containing protein, popc, and ions. So I used editconf
>> to make a .gro file. But when I want to make an index file, 2 CL ions are
>> not identified, so I can not choose it.
>>
>> use make_ndx f .pdb
>

use make_ndx -f .pdb

>
>
>> Sincerely,
>> Shima
>> --
>> gmx-users mailing list    gmx-users at gromacs.org
>> http://lists.gromacs.org/mailman/listinfo/gmx-users
>> * Please search the archive at
>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>> * Please don't post (un)subscribe requests to the list. Use the
>> www interface or send it to gmx-users-request at gromacs.org.
>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
>
>
>
> --
> Chandan kumar Choudhury
> NCL, Pune
> INDIA
>
>


--
Chandan kumar Choudhury
NCL, Pune
INDIA