[gmx-users] g_dist

[Justin A. Lemkul]

dina dusti wrote:
> Dear Prof.
> 
> Thank you very much from your response.
> He answer me that I should use from g_gyration for radius of micelle, 
> but what should I do for hydrocarbon (dry) core or calculation of inner 
> core of micelle (i.e. the first of carbon on tail of surfactant with COM 
> of micelle)?
> 

Use g_gyrate, with a custom index group that contains the atoms of interest.  If 
you're interested in the radius of the hydrocarbon atoms, make that an index 
group and perform the analysis on it.

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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