[gmx-users] quality of a topology and pdb2gmx

[Lara Bunte]

Hi

If you have a good parametrization of a molecule and it's pdb file and you use pdb2gmx for getting a topology, will the topology alway be finished? 


It is usual to fix something in the topology file after pdb2gmx or are necessary additions in the topology a hint for a bad or even wrong parametrization in the force field? 


Thanks
Greetings
Lara