[gmx-users] (no subject)

[Javier Cerezo]

You need to post how did you exactly installed fftw and gromacs in order 
to get more help. It seems to me that the problem is related to the 
shared fftw libraries. Could you compile the gromacs binaries with 
--disable-shared?

Javier

El 11/01/12 12:07, Anik Sen escribió:
> I have already done that but the problem persisits.
>
> ------------------------------------------------------------------------
> *From:* gmx-users-bounces at gromacs.org [gmx-users-bounces at gromacs.org] 
> on behalf of Javier Cerezo [jcb1 at um.es]
> *Sent:* Wednesday, January 11, 2012 1:56 PM
> *To:* gmx-users at gromacs.org
> *Subject:* Re: [gmx-users] (no subject)
>
> Hi
>
> You should compile your fftw with --enable-shared if you want to link 
> your gromacs installation to shared libraries (which is the default in 
> the latest versions). Check the installation instructions in the website.
>
> Javier
>
> El 11/01/12 08:20, Anik Sen escribió:
>> Im having problems installing Gromacs. I followed the GROMACS 
>> installation instructions as suggested by justin. But in vain. The 
>> same error is coming again and again. Please suggest.
>>
>> The error file is given below:
>>
>>
>> */usr/bin/ld: /usr/local/lib/libfftw3.a(plan-dft-r2c-3d.o): 
>> relocation R_X86_64_32 against `a local symbol' can not be used when 
>> making a shared object; recompile with -fPIC*
>>
>> */usr/local/lib/libfftw3.a: could not read symbols: Bad value*
>>
>> *collect2: ld returned 1 exit status*
>>
>> *make[3]: *** [libmd_d.la <http://libmd_d.la/>] Error 1*
>>
>> *make[3]: Leaving directory 
>> `/home/ganguly/Gromacs/gromacs-4.5.5/src/mdlib'*
>>
>> *make[2]: *** [all-recursive] Error 1*
>>
>> *make[2]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src'*
>>
>> *make[1]: *** [all] Error 2*
>>
>> *make[1]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src'*
>>
>> *make: *** [all-recursive] Error 1*
>>
>>
>>
>> Thanx in advance
>> Anik
>> ========================================================
>> Anik Sen
>> Student
>> CSIR-Central Salt & Marine Chemicals Research Institute,
>> Gijubhai Badheka Marg.
>> Bhavnagar, Gujarat 364002
>> www.csmcri.org
>> ========================================================
>>
>>
>
> -- 
> Javier CEREZO BASTIDA
> PhD Student
> Physical Chemistry
> Universidad de Murcia
> Murcia (Spain)
> Phone: (+34)868887434
>
>

-- 
Javier CEREZO BASTIDA
PhD Student
Physical Chemistry
Universidad de Murcia
Murcia (Spain)
Phone: (+34)868887434

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