[gmx-users] (no subject)

[Mark Abraham]

On 11/01/2012 10:07 PM, Anik Sen wrote:
> I have already done that but the problem persisits.

Get a clean tarball of FFTW3 and follow 
http://www.gromacs.org/Downloads/Installation_Instructions#Details_for_building_the_FFTW_prerequisite. 
Probably you have a mess of previous configure commands, or didn't 
actually install the --enable-shared binaries.

Mark

>
> ------------------------------------------------------------------------
> *From:* gmx-users-bounces at gromacs.org [gmx-users-bounces at gromacs.org] 
> on behalf of Javier Cerezo [jcb1 at um.es]
> *Sent:* Wednesday, January 11, 2012 1:56 PM
> *To:* gmx-users at gromacs.org
> *Subject:* Re: [gmx-users] (no subject)
>
> Hi
>
> You should compile your fftw with --enable-shared if you want to link 
> your gromacs installation to shared libraries (which is the default in 
> the latest versions). Check the installation instructions in the website.
>
> Javier
>
> El 11/01/12 08:20, Anik Sen escribió:
>> Im having problems installing Gromacs. I followed the GROMACS 
>> installation instructions as suggested by justin. But in vain. The 
>> same error is coming again and again. Please suggest.
>>
>> The error file is given below:
>>
>>
>> */usr/bin/ld: /usr/local/lib/libfftw3.a(plan-dft-r2c-3d.o): 
>> relocation R_X86_64_32 against `a local symbol' can not be used when 
>> making a shared object; recompile with -fPIC*
>>
>> */usr/local/lib/libfftw3.a: could not read symbols: Bad value*
>>
>> *collect2: ld returned 1 exit status*
>>
>> *make[3]: *** [libmd_d.la <http://libmd_d.la/>] Error 1*
>>
>> *make[3]: Leaving directory 
>> `/home/ganguly/Gromacs/gromacs-4.5.5/src/mdlib'*
>>
>> *make[2]: *** [all-recursive] Error 1*
>>
>> *make[2]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src'*
>>
>> *make[1]: *** [all] Error 2*
>>
>> *make[1]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src'*
>>
>> *make: *** [all-recursive] Error 1*
>>
>>
>>
>> Thanx in advance
>> Anik
>> ========================================================
>> Anik Sen
>> Student
>> CSIR-Central Salt & Marine Chemicals Research Institute,
>> Gijubhai Badheka Marg.
>> Bhavnagar, Gujarat 364002
>> www.csmcri.org
>> ========================================================
>>
>>
>
> -- 
> Javier CEREZO BASTIDA
> PhD Student
> Physical Chemistry
> Universidad de Murcia
> Murcia (Spain)
> Phone: (+34)868887434
>
>

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