[gmx-users] box changes its shape !
kw_bagherzadeh at yahoo.com
Mon Jan 30 06:54:42 CET 2012
Running MD, I faced a problem, after 1ps of modeling, the box changes its shape from dodecahedron to rhomboid cube! and as a result some parts of the protein gets out of the box. I fixed it with trjcon command but keep comming up. Would you mind telling me where this problem arise from?!
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the gromacs.org_gmx-users