[gmx-users] box changes its shape !
Mark.Abraham at anu.edu.au
Mon Jan 30 07:21:02 CET 2012
On 30/01/2012 4:54 PM, Kowsar Bagherzadeh wrote:
> Dear gmx-users,
> Running MD, I faced a problem, after 1ps of modeling, the box changes
> its shape from dodecahedron to rhomboid cube! and as a result some
> parts of the protein gets out of the box. I fixed it with trjcon
> command but keep comming up. Would you mind telling me where this
> problem arise from?!
This sounds like normal behaviour. See
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