[gmx-users] Nucleic acid simulation

[Justin A. Lemkul]

On 7/4/12 6:45 AM, Ravi Raja Merugu wrote:
> Hello every one,
>
> Im interesting in performing a MD for Protein - RNA complex , Can any
> one suggest a good  tutorial.
>

Such systems do not differ significantly from simulations of simple proteins in 
water, since pdb2gmx can produce topologies for both proteins and nucleic acids. 
  The remaining workflow is basically the same.

-Justin

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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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