July 2012 Archives by date

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Starting: Sun Jul 1 06:02:25 CEST 2012
Ending: Tue Jul 31 23:41:51 CEST 2012
Messages: 742

[gmx-users] Re: COM Pulling Raj
[gmx-users] DNA simulations Mark Abraham
[gmx-users] atom type Mark Abraham
[gmx-users] Structure optimization failure Mark Abraham
[gmx-users] chi1/chi2 Mark Abraham
[gmx-users] Re: COM Pulling Justin A. Lemkul
[gmx-users] Computing vectors normal (perpendicular) to molecules Andrew DeYoung
[gmx-users] Computing vectors normal (perpendicular) to molecules Mark Abraham
[gmx-users] Computing vectors normal (perpendicular) to molecules Mark Abraham
[gmx-users] Re: chi1/chi2 Raj
[gmx-users] Re: chi1/chi2 Mark Abraham
[gmx-users] error with grompp reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] error with grompp Mark Abraham
[gmx-users] error with grompp reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] error with grompp Mark Abraham
[gmx-users] error with grompp reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] error with grompp Mark Abraham
[gmx-users] error with grompp reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] error with grompp Mark Abraham
[gmx-users] error with grompp reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] error with grompp Mark Abraham
[gmx-users] number of contact Turgay Cakmak
[gmx-users] number of contact Justin A. Lemkul
[gmx-users] try2 ahmet yıldırım
[gmx-users] the effect of ligand on protein ahmet yıldırım
[gmx-users] PMF trails off to infinity. Laura Kingsley
[gmx-users] charmm36 parameters Covington, Cody Lance
[gmx-users] charmm36 parameters Justin A. Lemkul
[gmx-users] PMF trails off to infinity. Justin A. Lemkul
[gmx-users] PMF trails off to infinity. Laura Kingsley
[gmx-users] PMF trails off to infinity. Justin A. Lemkul
[gmx-users] PMF trails off to infinity. Kingsley, Laura J
[gmx-users] PMF trails off to infinity. Laura Kingsley
[gmx-users] PMF trails off to infinity. Justin A. Lemkul
[gmx-users] PMF trails off to infinity. Laura Kingsley
[gmx-users] PMF trails off to infinity. Justin A. Lemkul
[gmx-users] Re: the effect of ligand on protein ahmet yıldırım
[gmx-users] bindng energy & H bond energy calculation Ravi Raja Merugu
[gmx-users] problems with editconf reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] problems with editconf Justin A. Lemkul
[gmx-users] bindng energy & H bond energy calculation Justin A. Lemkul
[gmx-users] mdrun no structural output reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] problems with editconf reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] mdrun no structural output Justin A. Lemkul
[gmx-users] question to mdp file reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] question to mdp file Justin A. Lemkul
[gmx-users] question to mdp file reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Umbrella - Force constant Steven Neumann
[gmx-users] Implicit solvent setup for large protein Ramon Crehuet Simon
[gmx-users] Implicit solvent setup for large protein Justin A. Lemkul
[gmx-users] Umbrella - Force constant Justin A. Lemkul
[gmx-users] question to mdp file Justin A. Lemkul
[gmx-users] Umbrella - Force constant Steven Neumann
[gmx-users] Nose-Hoover does not couple Inon Sharony
[gmx-users] How to assign charge group for ester? zifeng li
[gmx-users] inquiry about SAS Turgay Cakmak
[gmx-users] inquiry about SAS Justin A. Lemkul
[gmx-users] Re: Regarding umbrella sampling simulations along H-bonds neeru sharma
[gmx-users] Re: Re: Regarding umbrella sampling simulations along H-bonds neeru sharma
[gmx-users] Pulling ligand - Different Profiles (Force vs time) Thomas Schlesier
[gmx-users] Force constant - units Thomas Schlesier
[gmx-users] PMF trails off to infinity. Thomas Schlesier
[gmx-users] PMF trails off to infinity. Justin A. Lemkul
[gmx-users] Umbrella - Force constant Thomas Schlesier
[gmx-users] Re: gmx-users Digest, Vol 99, Issue 12 Thomas Schlesier
[gmx-users] How to assign charge group for ester? Peter C. Lai
[gmx-users] Determining Force Constants for CG modelling Fabian Casteblanco
[gmx-users] Does thole polarization work? Denny Frost
[gmx-users] Implicit solvent setup for large protein Mark Abraham
[gmx-users] Does thole polarization work? David van der Spoel
[gmx-users] Regarding parameters for pull_groups in mdp file for the pull code neeru sharma
[gmx-users] Force constant - units Steven Neumann
[gmx-users] question about energy minimization reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Box Borders ifat shub
[gmx-users] BAR gives different result than TI Michael Brunsteiner
[gmx-users] Modifying Lennard-Jones cross term Hyungjun Kim
[gmx-users] Nucleic acid simulation Ravi Raja Merugu
[gmx-users] bindng energy & H bond energy calculation Ravi Raja Merugu
[gmx-users] Regarding parameters for pull_groups in mdp file for the pull code Justin A. Lemkul
[gmx-users] Nucleic acid simulation Justin A. Lemkul
[gmx-users] Modifying Lennard-Jones cross term lloyd riggs
[gmx-users] water with atom-based cut-off ... Michael Brunsteiner
[gmx-users] Re: DNA simulations SatyaK
[gmx-users] DNA simulations Christopher Neale
[gmx-users] Nucleic acid simulation Thomas Schlesier
[gmx-users] Regarding parameters for pull_groups in mdp file for the pull code neeru sharma
[gmx-users] COM RDF Dr. Vitaly V. G. Chaban
[gmx-users] COM RDF Justin A. Lemkul
[gmx-users] COM RDF Dr. Vitaly V. G. Chaban
[gmx-users] COM RDF Justin A. Lemkul
[gmx-users] g_rms on CA atoms only, with and without mass weighting -nomw Jan Domanski
[gmx-users] Box Borders Mark Abraham
[gmx-users] g_rms on CA atoms only, with and without mass weighting -nomw Mark Abraham
[gmx-users] Re: DNA simulations Mark Abraham
[gmx-users] water with atom-based cut-off ... Mark Abraham
[gmx-users] Modifying Lennard-Jones cross term Mark Abraham
[gmx-users] question about energy minimization Mark Abraham
[gmx-users] g_rms on CA atoms only, with and without mass weighting -nomw Jan Domanski
[gmx-users] Re: DNA simulations SatyaK
[gmx-users] Re: DNA simulations Mark Abraham
[gmx-users] MD simulation with varying pH J Peterson
[gmx-users] MD simulation with varying pH Gaurav Goel
[gmx-users] Re: DNA simulations Tsjerk Wassenaar
[gmx-users] MD simulation with varying pH Mark Abraham
[gmx-users] Re: DNA simulations SatyaK
[gmx-users] Re: DNA simulations SatyaK
[gmx-users] Re: DNA simulations Tsjerk Wassenaar
[gmx-users] Question about the translational diffusion sa
[gmx-users] bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails himanshu khandelia
[gmx-users] bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails Justin A. Lemkul
[gmx-users] question about energy minimization reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Question about the translational diffusion David van der Spoel
[gmx-users] question about energy minimization Justin A. Lemkul
[gmx-users] tricky business Michael Brunsteiner
[gmx-users] Re:Shell scripts lloyd riggs
[gmx-users] mdrun graceful exit Elton Carvalho
[gmx-users] hemoglobin simulations Khuri, Natalia
[gmx-users] Re: Re:Shell scripts shounakb
[gmx-users] Problem with minimizing the energy of the solvated system jonas87
[gmx-users] Re: Re:Shell scripts shounakb
[gmx-users] Re:Shell scripts Elton Carvalho
[gmx-users] Problem with minimizing the energy of the solvated system Justin A. Lemkul
[gmx-users] Re: Problem with minimizing the energy of the solvated system jonas87
[gmx-users] Re: Problem with minimizing the energy of the solvated system Justin A. Lemkul
[gmx-users] Re:Shell scripts lloyd riggs
[gmx-users] Re: Problem with minimizing the energy of the solvated system jonas87
[gmx-users] Re: Problem with minimizing the energy of the solvated system Justin A. Lemkul
[gmx-users] Re:Shell scripts Mark Abraham
[gmx-users] mdrun graceful exit Mark Abraham
[gmx-users] Re: DNA simulations SatyaK
[gmx-users] Re: bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails Dr. Vitaly V. G. Chaban
[gmx-users] Re:Shell scripts Tsjerk Wassenaar
[gmx-users] Re: Problem with minimizing the energy of the solvated system Tsjerk Wassenaar
[gmx-users] Crashes during protein-ligand simulation James Starlight
[gmx-users] specifying the direction of Pull in US Raj
[gmx-users] Re:Shell scripts lloyd riggs
[gmx-users] Re:Shell scripts lloyd riggs
[gmx-users] Re:Shell scripts hannes.loeffler at stfc.ac.uk
[gmx-users] specifying the direction of Pull in US Erik Marklund
[gmx-users] Re:Shell scripts Mark Abraham
[gmx-users] Re: specifying the direction of Pull in US Raj
[gmx-users] Re:Shell scripts lloyd riggs
[gmx-users] Crashes during protein-ligand simulation Justin A. Lemkul
[gmx-users] Re: specifying the direction of Pull in US Justin A. Lemkul
[gmx-users] DNA simulations Christopher Neale
[gmx-users] Re: bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails khandelia
[gmx-users] Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Error in Membrane simulations with POPC bilayer Justin A. Lemkul
[gmx-users] Re: bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails Justin A. Lemkul
[gmx-users] Re: bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails khandelia
[gmx-users] Crashes during protein-ligand simulation James Starlight
[gmx-users] Boundary dariush
[gmx-users] Calculation of instantaneous dipole moment through Gromacs Deepak Ojha
[gmx-users] Boundary Justin A. Lemkul
[gmx-users] Crashes during protein-ligand simulation Justin A. Lemkul
[gmx-users] Crashes during protein-ligand simulation James Starlight
[gmx-users] Crashes during protein-ligand simulation Justin A. Lemkul
[gmx-users] Re: bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails Dr. Vitaly V. G. Chaban
[gmx-users] Re: Calculation of instantaneous dipole moment Dr. Vitaly V. G. Chaban
[gmx-users] Re: specifying the direction of Pull in US Raj
[gmx-users] error in grompp reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Re: specifying the direction of Pull in US Justin A. Lemkul
[gmx-users] error in grompp Justin A. Lemkul
[gmx-users] Crashes during protein-ligand simulation James Starlight
[gmx-users] Crashes during protein-ligand simulation Justin A. Lemkul
[gmx-users] BAR gives different result than TI Michael Shirts
[gmx-users] Charmm foce field and free energy Eudes Fileti
[gmx-users] bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails Christopher Neale
[gmx-users] Dihedral potential - regd sukumar rapolu
[gmx-users] top file Shima Arasteh
[gmx-users] define a new residue Shima Arasteh
[gmx-users] error in grompp reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] define a new residue Shima Arasteh
[gmx-users] Crashes during protein-ligand simulation James Starlight
[gmx-users] define a new residue Shima Arasteh
[gmx-users] define a new residue Justin A. Lemkul
[gmx-users] top file Justin A. Lemkul
[gmx-users] error in grompp Justin A. Lemkul
[gmx-users] Crashes during protein-ligand simulation Justin A. Lemkul
[gmx-users] g_sham problem siddhant jain
[gmx-users] g_sham problem Justin A. Lemkul
[gmx-users] Re: Re: g_sham problem siddhant jain
[gmx-users] Re: Re: g_sham problem Justin A. Lemkul
[gmx-users] Re: Re: g_sham problem David van der Spoel
[gmx-users] define a new residue Shima Arasteh
[gmx-users] Fast Question on g_msd Ivan Gladich
[gmx-users] define a new residue Justin A. Lemkul
[gmx-users] define a new residue Shima Arasteh
[gmx-users] Two questions about index files Andrew DeYoung
[gmx-users] Two questions about index files Justin A. Lemkul
[gmx-users] define a new residue Justin A. Lemkul
[gmx-users] Re: Two questions about index files Andrew DeYoung
[gmx-users] Re: Two questions about index files Justin A. Lemkul
[gmx-users] define a new residue Shima Arasteh
[gmx-users] Peptide folding simulation bharat gupta
[gmx-users] error in grompp reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Fast Question on g_msd Javier Cerezo
[gmx-users] specifying the direction of Pull in US Thomas Schlesier
[gmx-users] About lipid simulation npt.mdp rama david
[gmx-users] Peptide folding simulation intra\sa175950
[gmx-users] force field parametrs for Mn2+ tarak karmakar
[gmx-users] Peptide folding simulation Justin A. Lemkul
[gmx-users] large radius problem siddhant jain
[gmx-users] large radius problem Justin A. Lemkul
[gmx-users] force field parametrs for Mn2+ andrea spitaleri
[gmx-users] define a new residue Shima Arasteh
[gmx-users] error in mdrun reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] error in mdrun Justin A. Lemkul
[gmx-users] error in mdrun (2) reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] error in mdrun reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] error in mdrun Justin A. Lemkul
[gmx-users] error in mdrun reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Reg dimers Ramya LN
[gmx-users] error in mdrun Justin A. Lemkul
[gmx-users] Reg dimers Justin A. Lemkul
[gmx-users] Reg dimers Ramya LN
[gmx-users] error in mdrun reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Problems with solvation in SW (water shell model) Eudes Fileti
[gmx-users] About lipid simulation... rama david
[gmx-users] force field parametrs for Mn2+ tarak karmakar
[gmx-users] force field parametrs for Mn2+ Justin A. Lemkul
[gmx-users] force field parametrs for Mn2+ tarak karmakar
[gmx-users] water model Shima Arasteh
[gmx-users] water model Peter C. Lai
[gmx-users] Re: DNA simulations SatyaK
[gmx-users] Re: DNA simulations Justin A. Lemkul
[gmx-users] node decomposition' problem Thales Kronenberger
[gmx-users] node decomposition' problem Justin A. Lemkul
[gmx-users] node decomposition' problem Justin A. Lemkul
[gmx-users] Re: bilayers move apart by nanometers upon implementing dihedral restraints on lipid tails khandelia
[gmx-users] POPC in water Shima Arasteh
[gmx-users] POPC in water Justin A. Lemkul
[gmx-users] Discontinuity in first time-step velocities for diatomic molecule locally coupled to thermal drain Berk Hess
[gmx-users] Nose-Hoover does not couple Berk Hess
[gmx-users] refcoord_scaling Katie Maerzke
[gmx-users] refcoord_scaling Justin A. Lemkul
[gmx-users] refcoord_scaling Christopher Neale
[gmx-users] נושא: RE: Discontinuity in first time-step velocities for diatomic molecule locally coupled to thermal drain Inon Sharony
[gmx-users] Re: Water molecules cannot be settled, why? John Ladasky
[gmx-users] Final state not reached in pulling simulation neeru sharma
RE: [gmx-users] נושא: RE: Discontinuity in first time-step velocities for diatomic molecule locally coupled to thermal drain Berk Hess
[gmx-users] Re: Water molecules cannot be settled, why? Tsjerk Wassenaar
[gmx-users] (no subject) sara elham
[gmx-users] equilibrium for water(pr.mdp) sara elham
[gmx-users] sovation with tip3p Shima Arasteh
[gmx-users] sovation with tip3p amir abbasi
[gmx-users] (no subject) amir abbasi
[gmx-users] question about the output of minimization reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] sovation with tip3p Justin A. Lemkul
[gmx-users] (no subject) Justin A. Lemkul
[gmx-users] question about the output of minimization Justin A. Lemkul
[gmx-users] (no subject) amir abbasi
[gmx-users] (no subject) Justin A. Lemkul
[gmx-users] question about the output of minimization reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] question about the output of minimization Justin A. Lemkul
[gmx-users] question about the output of minimization reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] question about the output of minimization Justin A. Lemkul
[gmx-users] Forcefield parameters for AcetylCoA Padmanabhan Anbazhagan
[gmx-users] Forcefield parameters for AcetylCoA Justin A. Lemkul
[gmx-users] more than one protonation per residue with pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] more than one protonation per residue with pdb2gmx Justin A. Lemkul
[gmx-users] Forcefield parameters for AcetylCoA Justin A. Lemkul
[gmx-users] sovation with tip3p Peter C. Lai
[gmx-users] Time for NPT or NVT equilibration Shima Arasteh
[gmx-users] Time for NPT or NVT equilibration Justin A. Lemkul
[gmx-users] More accurate potential energy in output? Markus Kaukonen
[gmx-users] More accurate potential energy in output? Justin A. Lemkul
[gmx-users] Simulation under collision thermostat James Starlight
[gmx-users] Sudden rise in temperature in NVE simulation delton
[gmx-users] pH and protein tarak karmakar
[gmx-users] Software inconsistency error Shima Arasteh
[gmx-users] more than one protonation per residue with pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] more than one protonation per residue with pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] problems with pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] pH and protein Justin A. Lemkul
[gmx-users] more than one protonation per residue with pdb2gmx Justin A. Lemkul
[gmx-users] g_saltbr speed Justin A. Lemkul
[gmx-users] more than one protonation per residue with pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin A. Lemkul
[gmx-users] more than one protonation per residue with pdb2gmx Justin A. Lemkul
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] g_saltbr speed Justin A. Lemkul
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] More accurate potential energy in output? Markus Kaukonen
[gmx-users] water bridge Raj
[gmx-users] water bridge Justin A. Lemkul
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] g_saltbr speed Justin A. Lemkul
[gmx-users] More accurate potential energy in output? David van der Spoel
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] g_saltbr speed Justin A. Lemkul
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] Final state not reached in pulling simulation neeru sharma
[gmx-users] more than one protonation per residue with pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] more than one protonation per residue with pdb2gmx Justin A. Lemkul
[gmx-users] (no subject) Markus Kaukonen
[gmx-users] Re: More accurate potential energy in output? Markus Kaukonen
[gmx-users] Re: More accurate potential energy in output? Markus Kaukonen
[gmx-users] Final state not reached in pulling simulation Thomas Schlesier
[gmx-users] Final state not reached in pulling simulation lloyd riggs
[gmx-users] Final state not reached in pulling simulation Justin A. Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin A. Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin A. Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Re: Final state not reached in pulling simulation Neeru Sharma
[gmx-users] Re: Final state not reached in pulling simulation Neeru Sharma
[gmx-users] Melting simulations - regd sukumar rapolu
[gmx-users] Re: Final state not reached in pulling simulation Neeru Sharma
[gmx-users] Re: Simulation under collision thermostat James Starlight
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Re: Water molecules cannot be settled, why? John Ladasky
[gmx-users] Some interactions seem to be assigned multiple times Shima Arasteh
[gmx-users] Re: Final state not reached in pulling simulation Justin A. Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin A. Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin A. Lemkul
[gmx-users] Melting simulations - regd Justin A. Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin A. Lemkul
[gmx-users] NVT with shape fluctuations J Benet
[gmx-users] Any ways to read/convert .g96 file format and keep the precision? Markus Kaukonen
[gmx-users] Re: Any ways to read/convert .g96 file format and keep the precision? Markus Kaukonen
[gmx-users] Re: Final state not reached in pulling simulation Neeru Sharma
[gmx-users] mdrun graceful exit Elton Carvalho
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] g_saltbr speed Justin A. Lemkul
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] g_saltbr speed Justin A. Lemkul
[gmx-users] g_saltbr speed Kavyashree M
[gmx-users] Re: Melting simulations - regd rapolu sukumar
[gmx-users] (no subject) sara elham
[gmx-users] Re: Melting simulations - regd Justin A. Lemkul
[gmx-users] (no subject) Justin A. Lemkul
[gmx-users] thanks sara elham
[gmx-users] Comparing amplitudes of motions in two MD simulations Igor Druz
[gmx-users] Conceptual question: Why are MD production simulations usually run in the NVT ensemble? Andrew DeYoung
[gmx-users] Re: Comparing amplitudes of motions in two MD simulations Andrew DeYoung
[gmx-users] Conceptual question: Why are MD production simulations usually run in the NVT ensemble? Justin A. Lemkul
[gmx-users] Re: Conceptual question: Why are MD production simulations usually run in the NVT ensemble? Andrew DeYoung
[gmx-users] Comparing amplitudes of motions in two MD simulations XAvier Periole
AW: [gmx-users] Re: Conceptual question: Why are MD production simulations usually run in the NVT ensemble? Florian Dommert
[gmx-users] Question about the Gromacs website Andrew DeYoung
[gmx-users] Question about the Gromacs website Justin Lemkul
[gmx-users] Question about the Gromacs website Rossen Apostolov
[gmx-users] Question about the Gromacs website Stephen P. Molnar
[gmx-users] RE: Question about the Gromacs website Andrew DeYoung
[gmx-users] Re: Conceptual question: Why are MD production simulations usually run in the NVT ensemble? Andrew DeYoung
[gmx-users] position restraints in SMD Raj
[gmx-users] position restraints in SMD Justin Lemkul
[gmx-users] Positions and velocities from trajectory for restart Inon Sharony
[gmx-users] Re: Positions and velocities from trajectory for restart Inon Sharony
[gmx-users] RE: נושא: RE: Discontinuity in first time-step velocities for diatomic molecule locally coupled to thermal drain Inon Sharony
[gmx-users] Positions and velocities from trajectory for restart Justin Lemkul
[gmx-users] NVT with shape fluctuations Mark Abraham
[gmx-users] Some interactions seem to be assigned multiple times Mark Abraham
[gmx-users] umbrella sampling Giovani Mancini
[gmx-users] umbrella sampling Justin Lemkul
Σχετ: [gmx-users] umbrella sampling Giovani Mancini
Σχετ: [gmx-users] umbrella sampling Justin Lemkul
[gmx-users] Possible problem with g_hbond Andrew DeYoung
[gmx-users] Possible problem with g_hbond Justin Lemkul
[gmx-users] Problem with Inflategro!!! Manikam Sadasivam Saravanan
[gmx-users] Problem with Inflategro!!! Justin Lemkul
[gmx-users] Simulation Box type tarak karmakar
[gmx-users] genconf command cuong nguyen
[gmx-users] Simulation Box type Mark Abraham
[gmx-users] DANGLING BOND IN GOLD-PROTEIN SIMULATION fatemeh ramezani
[gmx-users] why Blue Gene/Q is so slow? DeChang Li
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] genconf command Mark Abraham
[gmx-users] why Blue Gene/Q is so slow? Mark Abraham
[gmx-users] genconf command rama david
[gmx-users] Re: Re: why Blue Gene/Q is so slow? (Mark Abraham) DeChang Li
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin Lemkul
[gmx-users] Re: Any ways to read/convert .g96 file format and keep the precision? Markus Kaukonen
[gmx-users] Gromacs-Orca QMMM LJ coefficients problem minws
[gmx-users] Re: Any ways to read/convert .g96 file format and keep the precision? Justin Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer ( Dr. Vitaly V. G. Chaban
[gmx-users] How to speed up equilibrating the density of bulk system? Wu Chaofu
[gmx-users] Re: Gromacs-Orca QMMM LJ coefficients problem Minos Matsoukas
[gmx-users] Short question about 1-4, 1-5+ interactions abc def
[gmx-users] How to speed up equilibrating the density of bulk system? lloyd riggs
[gmx-users] Re: Re: why Blue Gene/Q is so slow? (Mark Abraham) Mark Abraham
[gmx-users] Re: Any ways to read/convert .g96 file format and keep the precision? Or any way to give accurate coordinates? Markus Kaukonen
[gmx-users] Re: Any ways to read/convert .g96 file format and keep the precision? Or any way to give accurate coordinates? Justin Lemkul
[gmx-users] How to speed up equilibrating the density of bulk system? Tsjerk Wassenaar
[gmx-users] Measuring hydrogen bonding in a specific region Alex Marshall
[gmx-users] Measuring hydrogen bonding in a specific region Justin Lemkul
[gmx-users] Re: Measuring hydrogen bonding in a specific region Andrew DeYoung
[gmx-users] Re: Measuring hydrogen bonding in a specific region Justin Lemkul
[gmx-users] Re: Measuring hydrogen bonding in a specific region Alex Marshall
[gmx-users] Re: Peptide folding simulation simula_460
[gmx-users] Some interactions seem to be assigned multiple times Peter C. Lai
[gmx-users] Some interactions seem to be assigned multiple times Shima Arasteh
[gmx-users] mdrun -j still functional? Dallas Warren
[gmx-users] Re: Peptide folding simulation jojartb at jgypk.u-szeged.hu
[gmx-users] Problem with Inflategro!!! Manikam Sadasivam Saravanan
[gmx-users] problems with pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] problems with pdb2gmx Justin Lemkul
[gmx-users] Problem with Inflategro!!! Justin Lemkul
[gmx-users] problems with pdb2gmx Mark Abraham
[gmx-users] Re: Peptide folding simulation Justin Lemkul
[gmx-users] Gromacs/Orca coordinates error chjim
[gmx-users] How to compute the C-H bond time correlation function for surfactant alkyl chain in micelle with the CHARMM and GROMOS sa
[gmx-users] Problem with Inflategro!!! Manikam Sadasivam Saravanan
[gmx-users] Problem with Inflategro!!! Justin Lemkul
[gmx-users] Merging of two trajectories James Starlight
[gmx-users] Merging of two trajectories Justin Lemkul
[gmx-users] Problem with Inflategro!!! Manikam Sadasivam Saravanan
[gmx-users] Problem with Inflategro!!! Justin Lemkul
[gmx-users] Error reading .xtc file nikhil gadewal
[gmx-users] Error reading .xtc file Justin Lemkul
[gmx-users] Re: About lipid simulation... rama david
[gmx-users] Merging of two trajectories James Starlight
[gmx-users] Merging of two trajectories Justin Lemkul
[gmx-users] Merging of two trajectories James Starlight
[gmx-users] About Surface tension in lipid simulation..... rama david
[gmx-users] dihedral correlation function g_angle and g_chi intra\sa175950
[gmx-users] 1replica/1cpu problem francesco oteri
[gmx-users] patching residues kaushik lakkaraju
[gmx-users] patching residues Justin Lemkul
[gmx-users] hydrogen bond between polymer and water zifeng li
[gmx-users] hydrogen bond between polymer and water Justin Lemkul
[gmx-users] Gromacs 54a7 force field Rajat Desikan
[gmx-users] Gromacs 54a7 force field Justin Lemkul
[gmx-users] Re: Gromacs 54a7 force field Rajat Desikan
[gmx-users] Re: Gromacs 54a7 force field Justin Lemkul
[gmx-users] Re: Gromacs 54a7 force field Rajat Desikan
[gmx-users] Re: Gromacs 54a7 force field Justin Lemkul
[gmx-users] Re: Gromacs 54a7 force field Rajat Desikan
[gmx-users] Re: Gromacs 54a7 force field Rajat Desikan
[gmx-users] Re: Gromacs 54a7 force field Thomas Piggot
[gmx-users] Re: Gromacs 54a7 force field Justin Lemkul
[gmx-users] Re: Gromacs 54a7 force field Thomas Piggot
[gmx-users] 1replica/1cpu problem Mark Abraham
[gmx-users] 1replica/1cpu problem francesco oteri
[gmx-users] Re: Water molecules cannot be settled, why? Ladasky
[gmx-users] question about pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] question about pdb2gmx Justin Lemkul
[gmx-users] question about pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] question about pdb2gmx Justin Lemkul
[gmx-users] question about pdb2gmx reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] question about pdb2gmx Justin Lemkul
[gmx-users] g_clustsize mohammad agha
[gmx-users] g_clustsize mohammad agha
[gmx-users] g_clustsize Justin Lemkul
[gmx-users] Re: Water molecules cannot be settled, why? Mark Abraham
[gmx-users] g_clustsize mohammad agha
[gmx-users] g_clustsize Justin Lemkul
[gmx-users] g_clustsize mohammad agha
[gmx-users] Replica Exchange with GPUs leandro.bortot at usp.br
[gmx-users] Please help with all-angles constraint ption radhika jaswal
[gmx-users] Please help with all-angles constraint ption Justin Lemkul
[gmx-users] CHARMM36 - Smaller Area per lipid for POPE - Why? Sebastien Cote
[gmx-users] is NOASSEMBLYLOOPS broken? francesco oteri
[gmx-users] Some interactions seem to be assigned multiple times Shima Arasteh
[gmx-users] Some interactions seem to be assigned multiple times Peter C. Lai
[gmx-users] CHARMM36 - Smaller Area per lipid for POPE - Why? Peter C. Lai
[gmx-users] Incorrect number of atomtypes for dihedral Debashis Sahu
[gmx-users] Incorrect number of atomtypes for dihedral Justin Lemkul
[gmx-users] Incorrect number of atomtypes for dihedral Debashis Sahu
[gmx-users] Some interactions seem to be assigned multiple times Shima Arasteh
[gmx-users] Incorrect number of atomtypes for dihedral Justin Lemkul
[gmx-users] dihedral types Katie Maerzke
[gmx-users] dihedral types Justin Lemkul
[gmx-users] dihedral types Katie Maerzke
[gmx-users] is NOASSEMBLYLOOPS broken? Mark Abraham
[gmx-users] Replica Exchange with GPUs Mark Abraham
[gmx-users] 1replica/1cpu problem Mark Abraham
[gmx-users] is NOASSEMBLYLOOPS broken? Justin Lemkul
[gmx-users] Re: gmx-users Digest, Vol 99, Issue 79 radhika jaswal
[gmx-users] all-angle constraints Mark Abraham
[gmx-users] (no subject) radhika jaswal
[gmx-users] all-angle constraints Justin Lemkul
[gmx-users] distance_restraints with flexible angle tarak karmakar
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] distance_restraints with flexible angle Justin Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin Lemkul
[gmx-users] distance_restraints with flexible angle tarak karmakar
[gmx-users] distance_restraints with flexible angle Justin Lemkul
[gmx-users] distance_restraints with flexible angle tarak karmakar
[gmx-users] GROMPP replaces lipid atom coordinates with these of water molecules Christian Blouin
[gmx-users] GROMPP replaces lipid atom coordinates with these of water molecules Justin Lemkul
[gmx-users] Issue with GROMACS file format SatyaK
[gmx-users] Issue with GROMACS file format Justin Lemkul
[gmx-users] Re: Issue with GROMACS file format SatyaK
[gmx-users] Re: Issue with GROMACS file format Justin Lemkul
[gmx-users] CHARMM36 - Smaller Area per lipid for POPE - Why? Sebastien Cote
[gmx-users] .hdb---file in gromacs Debashis Sahu
[gmx-users] .hdb---file in gromacs Justin Lemkul
[gmx-users] (no subject) Covington, Cody Lance
[gmx-users] CHARMM36 - Smaller Area per lipid for POPE - Why? Peter C. Lai
[gmx-users] constraints algorithm tarak karmakar
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Mark Abraham
[gmx-users] constraints algorithm Mark Abraham
[gmx-users] angle constraints tarak karmakar
[gmx-users] angle constraints Mark Abraham
[gmx-users] angle constraints tarak karmakar
[gmx-users] g_clustsize mohammad agha
[gmx-users] What is The gromacs tutorial output files? Ali Alizadeh
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] Regarding all angle constraint and hybridisation problem radhika jaswal
[gmx-users] What is The gromacs tutorial output files? Shima Arasteh
[gmx-users] angle constraints Broadbent, Richard
[gmx-users] angle constraints Mark Abraham
[gmx-users] How to constrain some angles? Wu Chaofu
[gmx-users] How to port the parmbsc0 correction to gromacs? ÏéÇ« ¿×
[gmx-users] How to constrain some angles? Mark Abraham
[gmx-users] How to port the parmbsc0 correction to gromacs? Mark Abraham
[gmx-users] angle constraints tarak karmakar
[gmx-users] converting Desmond trajectories to Gromacs Nidhi Jatana
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin Lemkul
[gmx-users] converting Desmond trajectories to Gromacs Justin Lemkul
[gmx-users] g_clustsize Justin Lemkul
[gmx-users] Re: angle constraints Thomas Schlesier
[gmx-users] Bins in wham analysis neeru sharma
[gmx-users] Re: Issue with GROMACS file format SatyaK
[gmx-users] Re: Issue with GROMACS file format Justin Lemkul
[gmx-users] Calculation of Spectroscopic properties Covington, Cody Lance
[gmx-users] Re: g_clustsize Justin Lemkul
[gmx-users] dendrimer simulation nemethl at pharm.u-szeged.hu
[gmx-users] dendrimer simulation Justin Lemkul
[gmx-users] dendrimer simulation nemethl at pharm.u-szeged.hu
[gmx-users] dendrimer simulation Justin Lemkul
[gmx-users] Server move tonight might cause temporary outage Erik Lindahl
[gmx-users] mass center of each molecule akn
[gmx-users] How to generated a .gro file for a special molecules? Ali Alizadeh
[gmx-users] mass center of each molecule Justin Lemkul
[gmx-users] How to generated a .gro file for a special molecules? Justin Lemkul
[gmx-users] adding a new atom type Shima Arasteh
[gmx-users] adding a new atom type Justin Lemkul
[gmx-users] adding a new atom type Shima Arasteh
[gmx-users] adding a new atom type Justin Lemkul
[gmx-users] Re: angle constraints Thomas Schlesier
[gmx-users] adding a new atom type Shima Arasteh
[gmx-users] Re: angle constraints Mark Abraham
[gmx-users] angle constraints Thomas Schlesier
[gmx-users] angle constraints Broadbent, Richard
[gmx-users] Hydroxyapatite MD odd behavior Ramon Garduno
[gmx-users] Hydroxyapatite MD odd behavior Justin Lemkul
[gmx-users] angle constraints Mark Abraham
[gmx-users] Mopac gomacs installation vidhya sankar
[gmx-users] distance restraints around Zn atom Priyanka Shah
[gmx-users] question about minimisation reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Fragmentation of molecule during final md radhika jaswal
[gmx-users] converting Desmond trajectories to Gromacs Nidhi Jatana
[gmx-users] Problem with REMD Antonia Mey
[gmx-users] Re: question about minimisation J Peterson
[gmx-users] Mopac gomacs installation Javier Cerezo
[gmx-users] Bins in wham analysis neeru sharma
[gmx-users] Re: question about minimisation reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Problem with REMD Mark Abraham
[gmx-users] distance restraints around Zn atom Mark Abraham
[gmx-users] Fragmentation of molecule during final md Mark Abraham
[gmx-users] converting Desmond trajectories to Gromacs Mark Abraham
[gmx-users] Re: question about minimisation Mark Abraham
[gmx-users] Re: question about minimisation reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Re: Problem with REMD ppxasjsm
[gmx-users] calculation of angle between two groups niaz poorgholami
[gmx-users] Writing velocity of particles using template.c prithvi raj pandey
[gmx-users] H-bonds per molecule across the box akn
[gmx-users] Re: question about minimisation Justin Lemkul
[gmx-users] Bins in wham analysis Justin Lemkul
[gmx-users] H-bonds per molecule across the box Justin Lemkul
[gmx-users] Writing velocity of particles using template.c Mark Abraham
[gmx-users] Re: angle constraints Thomas Schlesier
[gmx-users] Bins in wham analysis lloyd riggs
[gmx-users] Re: question about minimisation reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Re: Problem with REMD Mark Abraham
[gmx-users] Re: Bins in wham analysis Neeru Sharma
[gmx-users] Re: question about minimisation Justin Lemkul
[gmx-users] Re: question about minimisation Mark Abraham
[gmx-users] Re: Bins in wham analysis Neeru Sharma
[gmx-users] Re: Problem with REMD ppxasjsm
[gmx-users] Re: Attention:urgent Mark Abraham
[gmx-users] calculation of angle between two groups Mark Abraham
[gmx-users] Re: question about minimisation reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Re: question about minimisation Linus Östberg
[gmx-users] Re: question about minimisation reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] Re: question about minimisation Justin Lemkul
[gmx-users] Re: question about minimisation Justin Lemkul
[gmx-users] Simulation of the protein-ligand system embedded in membrane James Starlight
[gmx-users] Simulation of the protein-ligand system embedded in membrane Mark Abraham
[gmx-users] Re: question about minimisation reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] minimization force criteria tarak karmakar
[gmx-users] Re: distance restraints around Zn atom shahpriyanka26
[gmx-users] minimization force criteria Justin Lemkul
[gmx-users] Re: Attention:urgent R.S.K.Vijayan
[gmx-users] Simulation of the protein-ligand system embedded in membrane James Starlight
[gmx-users] calculation of angle between two groups niaz poorgholami
[gmx-users] calculation of angle between two groups Justin Lemkul
[gmx-users] nan in g_anaeig -over Joaquim Rui de Castro Rodrigues
[gmx-users] nan in g_anaeig -over Mark Abraham
[gmx-users] Topology file Shima Arasteh
[gmx-users] Topology file David van der Spoel
[gmx-users] RE: mdrun -j still functional? Dallas Warren
[gmx-users] Extending a run and changing nstxout Andrew DeYoung
[gmx-users] Extending a run and changing nstxout Justin Lemkul
[gmx-users] How to make the broken molecule into one radhika jaswal
[gmx-users] How to make the broken molecule into one Mark Abraham
[gmx-users] write velocity and coordinates with template.c prithvi raj pandey
[gmx-users] qyestion about restriction reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] qyestion about restriction Elton Carvalho
[gmx-users] qyestion about restriction reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] GROMACS OR NAMD Shima Arasteh
[gmx-users] GROMACS OR NAMD Shima Arasteh
[gmx-users] Re: Error in Membrane simulations with POPC bilayer J Peterson
[gmx-users] GROMACS OR NAMD Mark Abraham
[gmx-users] write velocity and coordinates with template.c Mark Abraham
[gmx-users] GROMACS OR NAMD Shima Arasteh
[gmx-users] Help of mdrun-gpu Du Jiangfeng (BIOCH)
[gmx-users] GROMACS OR NAMD Justin Lemkul
[gmx-users] Re: Error in Membrane simulations with POPC bilayer Justin Lemkul
[gmx-users] Re: Extending a run and changing nstxout Andrew DeYoung
[gmx-users] Re: Extending a run and changing nstxout Justin Lemkul
[gmx-users] nan in g_anaeig -over Joaquim Rui de Castro Rodrigues
[gmx-users] p_N head group lipid orientation yousef nademi
[gmx-users] p_N head group lipid orientation Justin Lemkul
Fw: [gmx-users] p_N head group lipid orientation yousef nademi
[gmx-users] adding a new atom type Shima Arasteh
[gmx-users] lincs with mttk Katie Maerzke
[gmx-users] p_N head group lipid orientation Justin Lemkul
[gmx-users] adding a new atom type Justin Lemkul
[gmx-users] adding a new atom type Shima Arasteh
[gmx-users] question about freeze reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] GROMACS OR NAMD Peter C. Lai
[gmx-users] GROMACS OR NAMD Shima Arasteh
[gmx-users] Hydroxyapatite MD odd behavior Ramon Garduno
[gmx-users] Help of mdrun-gpu Mark Abraham
[gmx-users] Re: question about freeze Dr. Vitaly V. G. Chaban
[gmx-users] adding a new atom type Mark Abraham
[gmx-users] Deuterate, heavyh options inconsistent (was: Water molecules cannot be settled, why?) Ladasky
[gmx-users] Deuterate, heavyh options inconsistent Justin Lemkul
[gmx-users] Hydroxyapatite MD odd behavior Justin Lemkul
[gmx-users] lincs with mttk Michael Shirts
[gmx-users] Re: question about freeze reisingere at rostlab.informatik.tu-muenchen.de
[gmx-users] energy-grps specification in mdp -regd Rajitha Tatikonda
[gmx-users] energy-grps specification in mdp -regd Mark Abraham
[gmx-users] Re: question about freeze Mark Abraham
[gmx-users] molecular composition of the system James Starlight
[gmx-users] molecular composition of the system Mark Abraham
[gmx-users] g_sgangle problem yousef nademi
[gmx-users] system blowing up Shima Arasteh
[gmx-users] system blowing up Shima Arasteh
[gmx-users] Diagnoding + system blowing up Shima Arasteh
[gmx-users] Re: question about freeze Dr. Vitaly V. G. Chaban
[gmx-users] Diagnoding + system blowing up Justin Lemkul
[gmx-users] g_sgangle problem Justin Lemkul
[gmx-users] Diagnoding + system blowing up Shima Arasteh
[gmx-users] Diagnoding + system blowing up Shima Arasteh
[gmx-users] extending simulation Bala subramanian
[gmx-users] extending simulation Mark Abraham
[gmx-users] Diagnoding + system blowing up Mark Abraham
[gmx-users] Re: system blowing up Dr. Vitaly V. G. Chaban
[gmx-users] Re: system blowing up Mark Abraham
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Re: system blowing up Shima Arasteh
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] metal ligand bond tarak karmakar
[gmx-users] DPOSRE not restraining tarak karmakar
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Diagnosing + system blowing up Justin Lemkul
[gmx-users] DPOSRE not restraining Justin Lemkul
[gmx-users] metal ligand bond Justin Lemkul
[gmx-users] Direction specific temperature coupling Ravi Bhadauria
[gmx-users] how to build a mixed lipid bilayer? xi zhao
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] About Box size vidhya sankar
[gmx-users] About Box size Mark Abraham
[gmx-users] Analysis of protein-ligand interactions James Starlight
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] About EM vidhya sankar
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] About EM Mark Abraham
[gmx-users] how to build a mixed lipid bilayer? Jianguo Li
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Analysis of protein-ligand interactions Justin Lemkul
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] how to build a mixed lipid bilayer? xi zhao
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] About pdb2gmx vidhya sankar
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] RMSD plot tarak karmakar
[gmx-users] About pdb2gmx tarak karmakar
[gmx-users] g_sgangle problem David van der Spoel
[gmx-users] About pdb2gmx Justin Lemkul
[gmx-users] About pdb2gmx Mark Abraham
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] RMSD plot Mark Abraham
[gmx-users] problems when using trjconv or g_msd to process xtc trajectory files with only a portion of all the atoms in the system rocwhite168
[gmx-users] RMSD plot tarak karmakar
[gmx-users] RMSD plot Mark Abraham
[gmx-users] RE: gmx-users Digest, Vol 99, Issue 113 Du Jiangfeng (BIOCH)
[gmx-users] RE: Re: Help of mdrun-gpu (Mark Abraham) Du Jiangfeng (BIOCH)
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] Gromacs installation rama david
[gmx-users] Gromacs installation Linus Östberg
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Gromacs installation Mark Abraham
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] a problem using g_sgangle Za Pour
[gmx-users] a problem using g_sgangle Justin Lemkul
[gmx-users] Gromacs installation rama david
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Gromacs installation Mark Abraham
[gmx-users] Gromacs installation rama david
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] About EM Error (simulation exploding) vidhya sankar
[gmx-users] Linear Interaction energy calculations sai nitin
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] About EM Error (simulation exploding) Justin Lemkul
[gmx-users] Linear Interaction energy calculations Justin Lemkul
[gmx-users] Diagnosing + system blowing up Mark Abraham
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] FATAL ERROR: Residue "LIG" not found in residue topology database. Ali Alizadeh
[gmx-users] FATAL ERROR: Residue "LIG" not found in residue topology database. Justin Lemkul
[gmx-users] FATAL ERROR Residue "LIG" not found in residue topology database? Ali Alizadeh
[gmx-users] make_ndx: duplicates groups appearing in index.ndx file Laura Kingsley
[gmx-users] make_ndx: duplicates groups appearing in index.ndx file Justin Lemkul
[gmx-users] Isothermal compressibility for polymers - regd ramesh cheerla
[gmx-users] Double X Simple precision marcelodepolo
[gmx-users] Re: Double X Simple precision markabraham
[gmx-users] Molecule in topology has atom numbers below and above natoms Thales Kronenberger
[gmx-users] Re: Molecule in topology has atom numbers below and above natoms Mark Abraham
[gmx-users] Diagnosing + system blowing up Shima Arasteh
[gmx-users] Diagnosing + system blowing up Justin Lemkul
[gmx-users] Diagnosing + system blowing up Shima Arasteh

Last message date: Tue Jul 31 23:41:51 CEST 2012
Archived on: Thu Nov 14 12:13:10 CET 2013

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