[gmx-users] question about energy minimization
reisingere at rostlab.informatik.tu-muenchen.de
reisingere at rostlab.informatik.tu-muenchen.de
Thu Jul 5 16:52:40 CEST 2012
Hi everybody,
I want to minimize the energy of my structure.
I use the following mdp file:
define = -DPOSRES
integrator = steep
emtol = 10
nsteps = 5000
nstenergy = 1
energygrps = System
coulombtype = PME
rcoulomb = 0.9
rvdw = 0.9
rlist = 0.9
fourierspacing = 0.12
pme_order = 4
ewald_rtol = 1e-5
pbc = xyz
But it nevers runs till the end. It allways stops before the end and I get
no pdb file. When I use nsteps = 2000 there is no problem and I receive a
pdb file but it says that there were not enough steps to get under a
specific force value.
My question is: is there a possibility to make the minimization run
longer? Can I set a parameter that makes it run longer?
Thank you,
Eva
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