[gmx-users] Reg dimers

[Ramya LN]

Thanks a lot Justin

On Mon, Jul 9, 2012 at 7:21 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>
>
> On 7/9/12 9:48 AM, Ramya LN wrote:
>>
>> Dear all,
>> I have done protein-ligand dynamics.I got the final gro file.When
>> converted to PDB, i observed that my active site has ligand but two
>> chains of teh protein got separated. What might be the reason for
>> this?should i consider this as an error in my simulation???kindly help
>> me in this regard.
>>
>
> http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions
>
> -Justin
>
> --
> ========================================
>
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
>
>
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-- 
Ramya